PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00615_0050
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family MYB_related
Protein Properties Length: 697aa    MW: 73154.9 Da    PI: 4.9935
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00615_0050genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding331.4e-10554145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwq 45
                     +++WT+eE+  l ++v+++G+g W++I +        + R+  ++k++w+
    kfl00615_0050  5 KQKWTEEEEVALRKGVERYGPGKWRAIQKDPKygpflTQRSNVDLKDKWR 54
                     79***********************************99**********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.86161IPR017930Myb domain
SuperFamilySSF466891.2E-14259IPR009057Homeodomain-like
SMARTSM007175.9E-7459IPR001005SANT/Myb domain
PfamPF002494.7E-8554IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-14556IPR009057Homeodomain-like
CDDcd116607.13E-21658No hitNo description
SMARTSM005265.5E-1698164IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150422.379101170IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.14E-15103175IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.6E-13104162IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.109.2E-16104169IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd000731.42E-16104189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MGAPKQKWTE EEEVALRKGV ERYGPGKWRA IQKDPKYGPF LTQRSNVDLK DKWRIMSRAE  60
GEPPRSRKMN QGTSSRPAKR AASTGSEDDE EAARKKKRRD IFLKYGEMIT EAVAALKEKS  120
GSSLTSIAKY IEDNHAVPFN FRRLIGGRLK TMVEEGMLIK GRGQAYRLND GTATESFEKP  180
VKAKTPRTKT DSERSRSKLE LGPDGNRRQK TAEEAAKAAA LAIAEAEAAA EAAEQAMREA  240
ELAEQEAAEA EAAAEAAAAA VRPPKKRSQK GVAALQEAAE AEGEHGGIPE GLTAQLLGVD  300
AGPPGGLRPT EQPAVHAGGF DGGWGAAFLA GDPERGVQQG EGVPLPEGLP RPEGLVRQEG  360
LAGPEGLARP EGFVRPEGLT RPEGLSHPEG LVRPEGLVRP EGLVAQGDSF GALMGLSSGQ  420
ALELPRDLRE PEGAGLLPLQ RPEGHPEGLT NQRTGSGSVG QQRVMPPPIS RGSEPAESVA  480
EFGRPNGAGQ SQGLMGLLQD PSPSRDPGVS QGFAISHDLQ PAEGLMPPQV CEPPPPQGLQ  540
NPQGLSVPQG LQRPEGLVRP EPLPTLDRPQ GGHAPQAGVS QGVEQVPGIK MQQGSAPPTG  600
PDPAASAPRA RDLAAPLATG TQNPDGLPEP NMRVQVGVPS ELPPATNGPS DVVEKRSGPA  660
VDGVPVPTEA IDPVVPMEVD VPADAEEVSG ETGLAKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19498KKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1IHP80.0A0A1Y1IHP8_KLENI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-33telomere repeat binding factor 1