PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00544_0010
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C3H
Protein Properties Length: 726aa    MW: 78075.7 Da    PI: 6.5389
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00544_0010genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-07426326
                   S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                   ++lCr+fa    Ck Gd C+F+H 
  kfl00544_0010  4 RVLCRYFAL-NACKKGDACPFSHN 26
                   89***9999.*************7 PP
2zf-CCCH201.2e-063454526
                   --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                    C f++r G C+yG +C++ H+
  kfl00544_0010 34 VCTFYLR-GNCSYGTNCRYEHV 54
                   6******.***********885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.615128IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5227IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-5326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4629IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6622956IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-53153IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-43454IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.54497527IPR000571Zinc finger, CCCH-type
SMARTSM003565.2498526IPR000571Zinc finger, CCCH-type
SuperFamilySSF578504.42E-12558635No hitNo description
Gene3DG3DSA:3.30.40.109.0E-9565630IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001622.59E-7568629No hitNo description
PROSITE profilePS5008911.575569628IPR001841Zinc finger, RING-type
SMARTSM001844.3E-6569627IPR001841Zinc finger, RING-type
PROSITE patternPS005180593602IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.43657685IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.878657686IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MTDRVLCRYF ALNACKKGDA CPFSHNLKDQ PSNVCTFYLR GNCSYGTNCR YEHVSARKLA  60
ETQGWGPLAG KPAAGGHPAP ESSPPSVLVS AHSPTAMILG GTQVESPIPT RPVSEDKGGV  120
NRDGVDANGG KSWAAMAAKA RKENGRELSK PGEKGANAPK GPVSGAKSPT KGVENGHAVG  180
QQGPNSVDAV LRSASGEVSD GNGSASGGVS SHTATETPLL DSSESDLPRQ TSDLGMSNGT  240
AQASEQAENA RDSSGEEFDV QRGAWRPPHL QEASEGGKVS PGIPHSISPG LNSAARAFSP  300
SSTYQDPNGG QYMPAAGYPP HMGGALMVPP YGLTDENGIP YEDNGLPDEL WDWVDQMTIS  360
DQDEYAAMNG YEMQGIAYVP GQPYPQSFSP SPPIAYVPGQ MYPQTYSPAP YQQYAQPYPE  420
AANPYLQTPQ VYHATPFPAA PQNPPETNSE HPQSSETAET PQTSGLVRNN SLDDFPHLAS  480
PNANPSETDN ANPNLSPKDQ PICPFAAAGD CPREKDGGSC GQLHGDKCPS CGKRCLHPHR  540
PEETKEHLEG CEKRVKKLKQ LQKSQKVECC VCLERVLSKP RVAERKFGIL SGCDHAFCIG  600
CIRGWRSGDH TTPGMDLNAV VRSCPVCRQQ SYFVTPSVVW YASPEEKDQI LEGYKRKLKA  660
IDCRHFNFGD GSCPFGTSCF YRHRFRDGRE EEVTLRHLGT ADGTVTIAKS VRLSDFIDLS  720
ALKKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1IG500.0A0A1Y1IG50_KLENI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40671523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-90C3H family protein