PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | kfl00520_0060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
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Family | GATA | ||||||||
Protein Properties | Length: 474aa MW: 50626 Da PI: 6.2781 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49 | 8.3e-16 | 8 | 42 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg t TplWRrgp ++ LCnaCG ++r++g+ kfl00520_0060 8 CTHCGITATPLWRRGPPEKPILCNACGSRWRHRGT 42 ****************66666***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.3E-9 | 2 | 54 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.85E-11 | 4 | 44 | No hit | No description |
CDD | cd00202 | 1.01E-15 | 7 | 42 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-12 | 8 | 42 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 8 | 33 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.255 | 8 | 41 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.7E-13 | 8 | 42 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence Send to blast |
MGAKSGPCTH CGITATPLWR RGPPEKPILC NACGSRWRHR GTLAGYMPMQ VTGLSTCHVP 60 TGFVASDEPV IPRVKSAGSL KRKERSERVG QDSERGLSDR LRERREKDGY ETDGSEASLS 120 GQAARRKMSP SWRQGFLSLT QTALLFPQLG PPSSPPPCAP PLPGANHAWS QATALLSDLH 180 AFDLDLSDVL TSEEPFAGLD DDVTLFDARQ GDPPAAEQPL KSLDPGQYIC GLVVRTRVEA 240 LAGPGARTNL APTNHVAEPH ALSSKVDAQA QNSMPLFPSS ARFTLPCRHA PPVPSAQVAW 300 PPAAPGLAQL NIAKLQGSDF GNGSPHRASF PDNLLFKGAA GPESLNDFMA RTEGDKRFGE 360 LAGAHGMPGS HDSLDSGASL VLDETREHPM VDLNPPPEQQ LPLSGGEYKA LLSPPAPEVP 420 LWGAEKGGEK DLRELHRMFS APIWDSLDMD PHGAEKEFGL GRFSVPPAEA GRPI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1Y1IES3 | 0.0 | A0A1Y1IES3_KLENI; GATA zinc finger-containing protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2749 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 3e-21 | GATA transcription factor 26 |