PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00492_0010
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C3H
Protein Properties Length: 1002aa    MW: 105898 Da    PI: 6.4342
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00492_0010genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.9e-07208229426
                    ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                    +lC +f++  +C++G++CkF+H+
  kfl00492_0010 208 ALCAHFLK-NQCRFGNTCKFSHS 229
                    79******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.779204231IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015205230IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5208229IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5209232IPR000571Zinc finger, CCCH-type
PROSITE profilePS5168744.1353861002IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.45E-38388414IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.45E-38446575IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.45E-38619747IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1503.2E-61639743IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138478.4E-10688747IPR025714Methyltransferase domain
CDDcd024407.12E-7689751No hitNo description
Gene3DG3DSA:3.40.50.1503.2E-618971002IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.81E-59111002IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059582.7E-6912955IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300915947IPR030390RNA methyltransferase TrmA, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1002 aa     Download sequence    Send to blast
MDDGNMSPQP SDLKRKATAA YSLSNDDRDR RPPKVAKLID PADKHSTMSD VIGRQAVPPL  60
PSEPLQGFQE SAFHDFREAG KDTTQFAPPL ENKAEKESLA LLEPSTGESR GETPGEIDDG  120
GVVRKVFKEA AERVHSTGGS HDTNGAACAA DAAPSMCAPE GQTSKGVPDG TREGLGLAGQ  180
AVPDLAAKGM DLDNKTASKE TQMQRDGALC AHFLKNQCRF GNTCKFSHSA GESVRPDSKH  240
TLGPVNSKGS DRSSMSAAEL AAQYGLLNKC VINVPKHWLT PDFKAFVDAL GVKYQSLKKQ  300
KGAILGFLTF ETVAQSDAAA AVLLKQTLRG SHLKISEARP RAWELRAMAQ PGGLVRGAKR  360
PPGQEGNQNN RTDSYDDDIR KDIRDAVTPW WRTEYAKQLE QKEATIGQLL KRLVRKARKA  420
WPQGVPSPAW LRHSKKHTGM ACPLLGIVAS PVTEGYRNKC EFTIGLGMDG QRTVGFQLGL  480
FREGYTAIAS PRECLNVSPV SKAYVEIIQD FIRTSELSVW DKKENKGVWR MVTIREGRAA  540
AEGGPEDGST KIGEQVLVMI QVSSRDAPSA DALQSEYGRL TEAIFSGAAA QSLPLTYLVV  600
QVHEGVSNAA PPDAPQIILV NNRTESGGVS NGTEASTSSD AAHIFEHMCG LKFRLSLSAF  660
FQVNTAAAEK LYRLAGDWAG LNRRTLLFDV CCGTGTIGLT LAGTVGKVVG IEMIAPAVED  720
ARKNAELNGI RNCEFVCGKA EAVLGKLLAR YASQVAPADA AADAAARDDV TDGGEVGADV  780
AANGGRQAAT TEVAPAEEAR GSAIGAADEE IGELINADLA AKGPRSDDVA ANGTPGTDTS  840
AAKERATPSV ASGPEAPAAS LEGVSERRKR GDDVSGASGA AVGASGEDVS GGTGSALRGE  900
DGEEALFSDV VAIVDPPRCG LHPNVLKALA AHERLRRLVY VSCNPESLLT NVLELCVASG  960
GANQGRGKGG ARAPPPFRPV KAMAVDLFPH TPHCEMVMLL ER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zq1_A8e-25456748126369Uncharacterized RNA methyltransferase SP_1029
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1IJ460.0A0A1Y1IJ46_KLENI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP60881112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.21e-122C3H family protein