PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00356_0010
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C3H
Protein Properties Length: 554aa    MW: 62118.9 Da    PI: 9.1315
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00356_0010genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07933127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                   +kt++C ++ + G C++ ++C+FaHg+
  kfl00356_0010  9 FKTKICEYYKE-GRCPR-EKCTFAHGE 33
                   69*****9999.*****.*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.4E-12639IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5838IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.126834IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5833IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-5933IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MGYTAQDLFK TKICEYYKEG RCPREKCTFA HGEAELRRLP PQRGRGYDQW RGPLPGHLDR  60
RGPRQYSPRP RSRTPPDYRD TNGRWEPRAP LAERLGDRRP LRRSGTPGSP SSREPSPKRA  120
RVDASPDAPR HSSSNEGRGR ERDSERDEDS HENERERERE RERERERERS ASPQRSQSPL  180
NDARHAQLAK RLAEERAANE ELEAKLAAYE DIRSELPELQ AENERLTKIN MAQKEKLEIM  240
QDLVDRKNRD IVEKDIKLAK LQKRSKAAED NTWAVGQLKK LAKADQQKRL AEQQYRQLLD  300
EALEVLRDHP ALVDDGADVF AIPKADGLRL EGRQKADHGP GANGTLEEKT RRAAIVEKSP  360
IKNTEPPNHE MRSPNAMVLR ERGHEGDGDP PLTREGSGRL WRAGARPYGG GQARGDAWDV  420
AKGDEDGAAN KGEAGLAKYP ADMERLTRKV QTAAQSEVGG GFFKTPANVV RNTKRFEEAS  480
GLGPGARGRG GATEKAPAEE RATATNGGRS PPEAGEYTET AKEEFRNMAY PMPIVKDTVM  540
QACYEETSEA VNIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158168RERERERERER
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1I9180.0A0A1Y1I918_KLENI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP51641215