PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00267_0010p
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family MYB_related
Protein Properties Length: 670aa    MW: 71413.6 Da    PI: 6.4271
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00267_0010pgenomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.6e-1154881046
                     HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                      ++++++k++G++ W+tIa++++ gRt++++k+ w++
   kfl00267_0010p 54 AQIIELHKLYGNK-WTTIASKLP-GRTDNEVKNAWYT 88
                     689**********.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.5651839IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.9E-42342IPR009057Homeodomain-like
SuperFamilySSF466891.33E-172596IPR009057Homeodomain-like
PROSITE profilePS5129418.8314094IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-174392IPR009057Homeodomain-like
SMARTSM007176.2E-104492IPR001005SANT/Myb domain
CDDcd001671.88E-74988No hitNo description
PfamPF002492.4E-95289IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
VCENEDCQGK PESLRLAWME VYGLNRSDKS CRLRFKNHLA PSLKKTPLSD VEWAQIIELH  60
KLYGNKWTTI ASKLPGRTDN EVKNAWYTQL KRAERKRKEL DLAKQPRFAM ASSIESNELS  120
TNQKQRPISA TSGIDTEGDS ARAQSAPQGR GANQRNTAWD LTQEGTFKFP AGTGSSSLAG  180
GFPRYPLGYP PVSIAPQSVQ SRASESHGSW LAQPGPEQPF SVDDFLLSSP LPLAPTAPRI  240
VPAERSSAPF GGPSPLQSAA NPRPRTSLRF PSPRSVRSLT SQPSAISVPS ASTARFPAPS  300
TASGPYGSGG AAASAPLWTL QQLMASCEPE PEKLSSTTAG PPAMFRFPPS GSRNVSGGPG  360
FSHVPGGTFP RPTEAPAGGM RSPRAVNVLG GAPWRFQGDF DGESSPWQPV QLRAGIWTVT  420
GDSWGPAVQP APPPFRPVAT DIRPRTQRQR ITSLSGMSRT NNLRVRVDNP SGEYPRQENF  480
VQSLDPWEGP QQTELPQNPP WDPATDLSLG PARGLSPVQA PEHPDQGLVA LSPVSTTLLL  540
PVSSFVLPPV DPIPPGAEGG LQHPGISLSP PPDFFWRITD HVKDTFAASL APPAALDYTR  600
SPSVPNDLDW LEAGSAVSRA PSLGAYPDTS DVRGLLSDAG ADAAADAGAE GDSPDEGDFP  660
PLTGKDYEGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-14269240106B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19097KRAERKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1I5150.0A0A1Y1I515_KLENI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.12e-22myb domain protein 121