PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00263_0160
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C3H
Protein Properties Length: 537aa    MW: 58607.4 Da    PI: 8.0214
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00263_0160genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.13e-133863126
                   --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                   yktelC+ f   G C+yG+ C+FaHg
  kfl00263_0160 38 YKTELCNKFETAGVCPYGGACQFAHG 63
                   9************************9 PP
2zf-CCCH222.9e-0776101126
                    --S---SGGGGTS.--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHg 26 
                    +kt+ C  ++++G +C+yG rC+F H+
  kfl00263_0160  76 FKTKQCE-WLASGrECPYGRRCHFKHP 101
                    69999*9.******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.3E-173370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-93669IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2253765IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-83764IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-103863IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-971104IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-771105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.11275103IPR000571Zinc finger, CCCH-type
SMARTSM003560.02375102IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-476101IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MTAATMSEEG VRLMNVQHPK SPRGYENAVK RLPTQGAYKT ELCNKFETAG VCPYGGACQF  60
AHGLEELRPV IRPPSFKTKQ CEWLASGREC PYGRRCHFKH PTDETLPLTS LHVRAKSWDA  120
AVPVSPKSFR ELGTSNLGKK VLFSWESPES DRFASGLPTF NKSLSSERVK FVNNWPSSAL  180
PSDGQLAALQ AGRRLSAGAI PLPQALHHDP PSPADLSIGL SRLSLSSRAD PLARLLIPQP  240
MPGSPSDHSD SEHSSPSKSQ GFAPHLGVEL SSPRKGPHSP RTTLTCKTSF EGSPRAFDAH  300
RPLHLEPSSP LHHSPYGRGP LSFTEGLSPT RAQAELTDAF KRVKASGSSY SERLAQLQFI  360
LDALTRRGLL GTELHVRVLE TMARDAVQHA DWNWFSQCRA QLTRLPAEVV WSRDEFTAYL  420
ILQSYLSGAL PVENLAALED RYPVESQGPI VHALAVCKAV AAGDFLSFFS LREAAPNLNG  480
IIMDAVANQM RNVGIRDILA AAAEHELAVD QMADLLGFRG NTAAFADWME AEGFAAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-1938104470Butyrate response factor 2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1I6480.0A0A1Y1I648_KLENI; CCCH zinc finger-containing SAC3/GANP/Nin1/mts3/eIF-3 p25 family protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.27e-27C3H family protein