PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00260_0030
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family HSF
Protein Properties Length: 369aa    MW: 40264.2 Da    PI: 6.7915
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00260_0030genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.89.5e-35301222103
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k++++++d ++++++sw ++ +sf+v+++ efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  ++         weF+++sFk+g+ +ll++i
  kfl00260_0030  30 FLSKTFQLVDDVSTDDIVSWGKHDTSFIVWKPMEFARDLLPNYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANESFKRGEPHLLSEI 116
                    9*********************99******************************************99.........******************* PP

                    XXXXXX CS
   HSF_DNA-bind  98 krkkse 103
                    +r+ks+
  kfl00260_0030 117 HRRKSS 122
                    ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-3721113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5826119IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.53E-3226119IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.1E-3130119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-193053IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-196880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-198193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MAKLSISIAD TSEAPLASLE TQRSSGPAPF LSKTFQLVDD VSTDDIVSWG KHDTSFIVWK  60
PMEFARDLLP NYFKHNNFSS FVRQLNTYGF RKVVPDRWEF ANESFKRGEP HLLSEIHRRK  120
SSAISPSSSG GGAASLPSPD ICPPDSPDSI ICDQFEPPGG EASPPAQPGN APLGQIPGQS  180
LSVENERLTR DNVLLLNELT RVRKMYDDAV VFIQYQARVA MQMRGGPFLH PGAHMQNPMA  240
AYATLMQHMP GCVNPAMSGF STVDYDGKGK EMFPGYAAQA GGVPNLNRSK SEGAPVEGHA  300
EGSAQRFASP CVGYPGFPQG FQHYRSTEGS RDERGPKLFG VCLDAEGTRR REGEELARGG  360
EKRVKREAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A4e-22251192106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A4e-22251192106HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_175142.15e-67heat shock transcription factor B4
SwissprotQ9C6354e-68HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A1Y1I4M80.0A0A1Y1I4M8_KLENI; Uncharacterized protein
STRINGAT1G46264.12e-66(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-60heat shock transcription factor B4