PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00237_0160
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family MYB_related
Protein Properties Length: 369aa    MW: 39530.6 Da    PI: 9.1555
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00237_0160genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.5e-145498147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT++E+ ++++a +++  + W++I +++g ++t  q++s+ qky
    kfl00237_0160 54 RENWTEQEHNKFLKALELFDRD-WRKIEEYVG-TKTVIQIRSHAQKY 98
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.95E-1748104IPR009057Homeodomain-like
PROSITE profilePS5129416.98849103IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-651105IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-1752101IPR006447Myb domain, plants
SMARTSM007171.2E-1153101IPR001005SANT/Myb domain
PfamPF002495.6E-125498IPR001005SANT/Myb domain
CDDcd001672.41E-95699No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MLGQGAFSPG LGPPPGDMAA GPLTPVLSPS GELSGKGDDM HGKVRKPYTI TKQRENWTEQ  60
EHNKFLKALE LFDRDWRKIE EYVGTKTVIQ IRSHAQKYFL KVQKLGQDAH VPPPRPKRKS  120
SQPYPQKASK VVAAAHAAQQ AAVASSKVYS PREGAYTPGG AHPAVPPQSP QEETGTLGAP  180
AWGPDTPSKA NPDFAKVYRF LGDVFEIGVA GNLQKLKCMP PIDRETIILL MRNLAINLAS  240
PVFAEQQHIL ALADSSARGQ QPEEPAQPRM IEPESQSAPP TPSDASVTPG EQGNLVATGA  300
PFLDSPGYRD TVQQQQQSPL YEQGGRGVTR ASSFADGVPL GLGLGLGVSQ TIQRDMRTES  360
KEPAKSVGG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008643552.18e-74putative MYB DNA-binding domain superfamily protein isoform X3
RefseqXP_020408898.17e-74putative MYB DNA-binding domain superfamily protein isoform X4
SwissprotC0SVG51e-65RVE5_ARATH; Protein REVEILLE 5
TrEMBLA0A1Y1I6A30.0A0A1Y1I6A3_KLENI; Myb DNA-binding domain protein
STRINGSb04g031820.13e-72(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9281558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.22e-35MYB_related family protein
Publications ? help Back to Top
  1. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]