PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantTFDB

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Binding Motif |

Orthologous Group |

Basic Information? help Back to Top

TF ID

kfl00209_0160

Organism

Klebsormidium flaccidum

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium

Family

Protein Properties

Length: 168aa MW: 17662.2 Da PI: 9.0306

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
kfl00209_0160	genome	KFGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.9	1e-44	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCaaCk+lrrkC+++C +apyfp +qp+kfanvhk+FG++n++kll++lp ++reda++sl+yeA+ar++dPvyG+vg i+ lqqq++ql+a+la kfl00209_0160 11 ACAACKFLRRKCTAQCLFAPYFPPDQPQKFANVHKIFGVANITKLLSELPLHQREDAVNSLAYEADARVKDPVYGCVGAISVLQQQVAQLSADLAI 106 7**********************************************************************************************9 PP DUF260 97 lkee 100 +++e kfl00209_0160 107 ANAE 110 9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.341	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.7E-43	11	108	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MRMAGNSAGS ACAACKFLRR KCTAQCLFAP YFPPDQPQKF ANVHKIFGVA NITKLLSELP 60 LHQREDAVNS LAYEADARVK DPVYGCVGAI SVLQQQVAQL SADLAIANAE LARYQQRGPA 120 QGGLQQQAGP SDPLAFATLA GTMAALGGMQ GQGGSVGPLQ RPPHGRQS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-55	8	114	8	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-55	8	114	8	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00581	DAP	Transfer from AT5G63090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024361359.1	3e-62	protein LATERAL ORGAN BOUNDARIES-like
Swissprot	Q9FML4	5e-55	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A1Y1I1S1	1e-118	A0A1Y1I1S1_KLENI; Lateral organ boundaries (LOB) domain-containing protein
STRING	PP1S71_7V6.1	1e-61	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	2e-50	LOB domain-containing protein 25

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]