PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | kfl00203_0120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
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Family | C2H2 | ||||||||
Protein Properties | Length: 634aa MW: 69967.1 Da PI: 9.1057 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00084 | 357 | 379 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C k + +L+ H++++ kfl00203_0120 357 YICEYCLKYMRKAKTLQAHLQKC 379 89******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.30.270 | 2.1E-32 | 178 | 255 | No hit | No description |
SuperFamily | SSF54160 | 3.85E-21 | 182 | 324 | IPR016197 | Chromo domain-like |
Pfam | PF11717 | 4.5E-14 | 193 | 241 | IPR025995 | RNA binding activity-knot of a chromodomain |
CDD | cd00024 | 2.75E-5 | 201 | 237 | No hit | No description |
Gene3D | G3DSA:2.30.30.270 | 2.1E-32 | 318 | 367 | No hit | No description |
PROSITE profile | PS51726 | 72.02 | 323 | 624 | IPR002717 | Histone acetyltransferase domain, MYST-type |
SuperFamily | SSF55729 | 2.24E-105 | 326 | 390 | IPR016181 | Acyl-CoA N-acyltransferase |
Gene3D | G3DSA:3.40.630.30 | 2.7E-68 | 383 | 553 | IPR016181 | Acyl-CoA N-acyltransferase |
SuperFamily | SSF55729 | 2.24E-105 | 423 | 612 | IPR016181 | Acyl-CoA N-acyltransferase |
Pfam | PF01853 | 1.7E-80 | 423 | 590 | IPR002717 | Histone acetyltransferase domain, MYST-type |
CDD | cd04301 | 1.20E-4 | 471 | 522 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016747 | Molecular Function | transferase activity, transferring acyl groups other than amino-acyl groups |
Sequence ? help Back to Top |
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Protein Sequence Length: 634 aa Download sequence Send to blast |
MLPAEATMPR LDETQSPLPS VHLPKQSSAR GNHAFPENGG TGRLPPSMAH ASPSLREQDA 60 APLHAKLPVL GAASVSGTGK RLANAQAPRQ HATGGFSASQ VREGGSPSAA AVQSDSRARV 120 GGVAEGRAGL QAGSASLRES QTPGKAAEQS GYRLSDSNGV RVDGNGAGPS SNGGNPGPSN 180 GMAKDYSVGD KVAALASFDQ SYHMAEVIER RKHRKGGQYD YYIHYLDQNK RLDEWLPPSK 240 VEPWTAAEFS GRGTGFGLSP LATPGTPGYS AGDKADPFTP GGSDRKLTRN LKRKYDAEHH 300 VQKSVEDLPP IDQSLEKAHE EKTKMKNIQQ IVVGKHAIDT WYYSPYPDDY ASELKLYICE 360 YCLKYMRKAK TLQAHLQKCT THRPPGEEIY HADYPIWSRL PKAEGENGRR ERSPAPIVKN 420 MVTLSMYEVD GVKNKVYCQN LCLLAKLFLD HKTLYYDVDP FLFYVLTECD EDGHHIVGYF 480 SKEKHSAEEY NLACIMTLPP YQRNGYGRFL IAFSYELSRK EGKVGTPERP LSDLGQVSFR 540 SYWMRVILEI IKEHRANISV KDISALTAIK TEDIVATLQP LNLIKYWKGQ HIISATVKLI 600 DEHLKAIDHQ PLPKIESAKL TWTPPASPAL KKPR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4dnc_A | 1e-117 | 319 | 631 | 1 | 285 | Histone acetyltransferase KAT8 |
4dnc_B | 1e-117 | 319 | 631 | 1 | 285 | Histone acetyltransferase KAT8 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Histone acetyltransferase which may be involved in transcriptional activation. Acetylates 'Lys-5' of histone H4 (H4K5ac) (PubMed:17877703, PubMed:19040736, PubMed:22170978, PubMed:23273925). Essential for gametophyte development (PubMed:19040736). Involved in DNA repair after UV-B exposure (PubMed:22170978). Negative regulator of flowering controlling the H4K5ac levels in the FLC chromatin (PubMed:23273925). {ECO:0000269|PubMed:17877703, ECO:0000269|PubMed:19040736, ECO:0000269|PubMed:22170978, ECO:0000269|PubMed:23273925}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated upon UV-B exposure. {ECO:0000269|PubMed:22170978}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024399982.1 | 0.0 | histone acetyltransferase of the MYST family 1-like | ||||
Swissprot | Q9FLF7 | 1e-141 | MYST1_ARATH; Histone acetyltransferase of the MYST family 1 | ||||
TrEMBL | A0A1Y1I1E7 | 0.0 | A0A1Y1I1E7_KLENI; Histone acetyltransferase | ||||
STRING | PP1S1_162V6.2 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3890 | 4 | 5 |