PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | kfl00150_0190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
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Family | NF-YC | ||||||||
Protein Properties | Length: 152aa MW: 16443.9 Da PI: 4.0547 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 65 | 1.4e-20 | 35 | 115 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +h+lPlar+k+++ka+ dv++++aea +l++ka elf+ +l+ ++ h + +r tl+ d++++v++ d +fl di p+ kfl00150_0190 35 EHKLPLARVKRLIKAESDVTQLTAEAGALITKATELFLEKLATQAARHMVDDSRVTLRYKDVSTTVKEEDSLEFLRDITPE 115 79****************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.27E-16 | 30 | 114 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-13 | 37 | 98 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 5.0E-23 | 38 | 114 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MGDSAPDDRE GAGGAMEGQE QGGPSGAAAK HPALEHKLPL ARVKRLIKAE SDVTQLTAEA 60 GALITKATEL FLEKLATQAA RHMVDDSRVT LRYKDVSTTV KEEDSLEFLR DITPEPLTAI 120 QLAEGPENGE IDEESTDEDD DELAENENDE RT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5y26_B | 4e-15 | 23 | 112 | 1 | 89 | Putative transcription factor C16C4.22 |
5y27_B | 4e-15 | 23 | 112 | 1 | 89 | Putative transcription factor C16C4.22 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1Y1I225 | 1e-103 | A0A1Y1I225_KLENI; Putative nuclear factor Y subunit C |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP315 | 17 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 1e-16 | nuclear factor Y, subunit C4 |