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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | kfl00143_0060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
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Family | AP2 | ||||||||
Protein Properties | Length: 794aa MW: 82912.9 Da PI: 4.726 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.9 | 3.4e-10 | 271 | 318 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV+ + rW A+I++ r+ ++lg+f t+e A +a+++a +k++g kfl00143_0060 271 SRFKGVTPH--HSRWQARIKEA-----RRDIHLGYFNTEEAAVRAYDRAVLKFRG 318 789***854..57********3.....5************************998 PP | |||||||
2 | AP2 | 43.8 | 6.6e-14 | 539 | 585 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+++++ grW A+I+d r+ ++lg+f+t+ Aa+a+++a+++++g kfl00143_0060 539 AYRGITRHH--GRWQARIKDQ-----RRDIHLGYFDTEIAAARAYDQAALRYRG 585 69****876..*********3.....5**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.5E-11 | 271 | 325 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.3E-4 | 271 | 318 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.98E-14 | 271 | 324 | No hit | No description |
SMART | SM00380 | 3.2E-15 | 272 | 332 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.8E-10 | 272 | 325 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.457 | 272 | 326 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-15 | 538 | 593 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15.909 | 539 | 593 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-20 | 539 | 599 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-7 | 539 | 585 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-17 | 539 | 594 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 794 aa Download sequence Send to blast |
MAFQVDEFMN VPEDEVEAAE TGGAGEGQAV VEQGNGAETT QTLPAETVQV AEQAVTTDVG 60 QDVATQANDT GTKDAGTGAS ETEEAQPVAD VAAVAPAIIP PRVADPPVAE ASTVQKADAS 120 IQHEPLPGAS LYAFSERIEQ GSGDAPDEGV IDQGGELDAA MEAPPISMAV RQSMESDLAP 180 PLPAEPQVTK EAAPPTSAPH QQDPYNRPDL QLSMAALQQA ASILQSSNQT DASARNAVSD 240 ASQALQNVAL LQSMVRLLPT EGLKMKHGRP SRFKGVTPHH SRWQARIKEA RRDIHLGYFN 300 TEEAAVRAYD RAVLKFRGAE GLTNLCAADY EEPATVHTPT GVPGKVDAAT MTPIDCAESK 360 GANPLPHGYS PEQDDLLPGL MRCPKCGKMK TGDGTQPTTT AAAPPAAPGP PPPPPPRHAL 420 PRLKLPTVAE FWSAAAAALS PPNGIGALSP RDAAPAAQKS TTAGPSSSAP PMAPALPSQT 480 APPLFTRPRP EAIQNVLVHP VTSLATLAAM DALVLREAGI DPELFFNTQK RRALQRTSAY 540 RGITRHHGRW QARIKDQRRD IHLGYFDTEI AAARAYDQAA LRYRGTKAQL NFPETDYPPE 600 LKQEGERRVA AGALQDVEDP IIAQKRKELL GTLRAERAQA KRQKVLAQGG KPKARRVGGA 660 PGQPDAGELP AGWQGQQGGG LVGAEGTMPL EAVNTEGVQA SGVNGSAPVP VQPGLLQLPA 720 PGGELGQVGA EVAQSVAEVE MPGPIPVAES VSVAEDGMAG PIPVAAEVPG VEPWVPGGEG 780 PADQEIHATI PLQT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1Y1HYN6 | 0.0 | A0A1Y1HYN6_KLENI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP497 | 17 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20840.1 | 1e-11 | AP2 family protein |