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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | kfl00124_0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
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Family | AP2 | ||||||||
Protein Properties | Length: 772aa MW: 82641.9 Da PI: 8.7538 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.8 | 1.3e-13 | 407 | 458 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+++GV+++ +grW+A+I g +k+ +lg ++t+eeAa+a+++ + + +g+ kfl00124_0020 407 SKFRGVTRHQ-KGRWEARIGQlQ---G-KKYMYLGLYDTEEEAAAAYDREAIRQKGH 458 79*****999.7******77732...3.6********************99998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.719 | 313 | 372 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-11 | 315 | 378 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-9 | 325 | 373 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.00E-11 | 332 | 372 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.1E-10 | 334 | 372 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-17 | 407 | 467 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.3E-8 | 407 | 455 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.54E-22 | 407 | 467 | No hit | No description |
SMART | SM00380 | 1.8E-26 | 408 | 471 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.817 | 408 | 465 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-16 | 408 | 465 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 772 aa Download sequence Send to blast |
MLPTPSDKPG SQTDETHDAA TVASIIDAYY GPHARSEDAR TLNFLNDQGP DGRRPNTDAS 60 HPGSSGPAST PPTAGSSDLT QQGSFLHREK GPISPAVAVR SSPGEEEGIT KKNESLKAAV 120 GGIHSPLARG SAAFEGGPGS GEVAGEVREQ AALRSLLAEF QGSPADLLAL MQRDEEAEEA 180 EIEEGGSGLR RVTSSGSGGA ARMFDVEPLF SGGMMEALLG RMEEQRADED VSSPAKKMIL 240 RNSSLQVGKV LSPGSEGQSR ISHDDPMKTL STTPFPLRRS EEKPPNEKGG IEQQLVTEEP 300 AQRDPVVADT ISLSGGTKRR RLSERKRPEN STSRENGKQL YLGGFDSEEQ AALAYDIAAI 360 KCRGASAQTN LALENYRAHF DDISAVSKDE LVMSLRRHSK GFSRGSSKFR GVTRHQKGRW 420 EARIGQLQGK KYMYLGLYDT EEEAAAAYDR EAIRQKGHHA VTNFDISLLL SQQASQAVQR 480 QQEQQRAQSL QPPPFAPPPH AQLPPTSPPS LQASPRYAPP RARTPPSRPH SSPRQVRSPS 540 LRSPGASNRL RPQASSPTFS LSAALGQTPP GSPPYHRSQS WPRTQPLSGP YVGLGGFAPV 600 GPQPSAAVPA DVSLEQAALW RSVFGQPGGA HVGWGNVPMP QPSPSEFQPG AMPPQQRPAK 660 LVARRGPVEA PPLAAGSPPL GSGGGTGGAQ PVPQTEVEST RPGLAARRRM LRRRKMALSQ 720 MYHQQRQIDD LELVAPAEQS LQSQPSPYPG QEQPLEQEHL QGLGGLHPSS YE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 317 | 321 | KRRRL |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP497 | 17 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 2e-38 | AINTEGUMENTA-like 5 |