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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | kfl00056_0320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
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Family | C3H | ||||||||
Protein Properties | Length: 152aa MW: 17074.4 Da PI: 8.3769 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 45.8 | 1e-14 | 80 | 105 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yktelC+ + + G+C+yG++C+FaHg kfl00056_0320 80 YKTELCNKWEEQGQCPYGPKCQFAHG 105 9************************8 PP | |||||||
2 | zf-CCCH | 19.8 | 1.4e-06 | 118 | 143 | 1 | 26 |
--S---SGGGGTS.--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHg 26 +kte+Cr ++G C+yG rC+F H+ kfl00056_0320 118 FKTEICRLV-ANGyKCPYGHRCHFRHS 143 69*****55.5588**********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.75E-11 | 76 | 111 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-19 | 76 | 112 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.793 | 79 | 107 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.2E-8 | 79 | 106 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.9E-12 | 80 | 105 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-11 | 113 | 145 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.24E-8 | 114 | 144 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.882 | 117 | 145 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0033 | 117 | 144 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MGNLPYFGLG LRNLDSLPTA GGISLAAHVP ALLPKSINVR ESTLRAVKEE QERGVKRARE 60 EDDHDAGEAR KKAASHPGYY KTELCNKWEE QGQCPYGPKC QFAHGIEELR PVLRHPKFKT 120 EICRLVANGY KCPYGHRCHF RHSIEGDDVP VL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 3e-22 | 80 | 145 | 4 | 69 | Butyrate response factor 2 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00383 | ampDAP | Transfer from AT1G68200 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010693523.1 | 8e-38 | PREDICTED: zinc finger CCCH domain-containing protein 14 | ||||
Refseq | XP_019164905.1 | 1e-37 | PREDICTED: zinc finger CCCH domain-containing protein 15 | ||||
Refseq | XP_019164906.1 | 1e-37 | PREDICTED: zinc finger CCCH domain-containing protein 15 | ||||
Swissprot | Q6L5G1 | 7e-34 | C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A1Y1HR26 | 1e-109 | A0A1Y1HR26_KLENI; CCCH-type Zn-finger protein | ||||
STRING | XP_010693523.1 | 3e-37 | (Beta vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2058 | 16 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.2 | 4e-36 | C3H family protein |
Publications ? help Back to Top | |||
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