PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantTFDB

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

gw1.9.419.1

Common Name

CHLNCDRAFT_17840

Organism

Chlorella variabilis NC64A

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Protein Properties

Length: 77aa MW: 8726.02 Da PI: 9.5226

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gw1.9.419.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	85.6	6.2e-27	3	77	2	76
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 Cq++gC+adls + +y+ r ++C h a++ l +g e rfCq+C+ h l e+D krsCrr La hn+rrrk+ gw1.9.419.1 3 CQADGCRADLSALPRYNVRNHICLEHKAAEAFLKQGAEVRFCQRCGVAHPLGEYDGLKRSCRRMLALHNSRRRKS 77 *************************************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	22.204	1	77	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.81E-24	3	76	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	3.8E-22	3	64	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.7E-26	3	76	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence Send to blast
GECQADGCRA DLSALPRYNV RNHICLEHKA AEAFLKQGAE VRFCQRCGVA HPLGEYDGLK 60 RSCRRMLALH NSRRRKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-15	3	76	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	76	SRRRKS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005847945.1	2e-50	hypothetical protein CHLNCDRAFT_17840, partial
TrEMBL	E1ZEB8	4e-49	E1ZEB8_CHLVA; Uncharacterized protein (Fragment)
STRING	XP_005847945.1	7e-50	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57920.1	7e-20	squamosa promoter binding protein-like 15

Link Out ? help Back to Top
Entrez Gene	17355393

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]