PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | gw1.6.118.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | C2H2 | ||||||||
Protein Properties | Length: 668aa MW: 74273 Da PI: 6.8963 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 322 | 344 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg+++++ + L++H+++ + gw1.6.118.1 322 SCEVCGQVCKSAHGLRTHQNRwC 344 6******************9977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47576 | 2.62E-26 | 25 | 146 | IPR001715 | Calponin homology domain |
Gene3D | G3DSA:1.10.418.10 | 8.1E-32 | 27 | 146 | IPR001715 | Calponin homology domain |
PROSITE profile | PS50021 | 9.537 | 28 | 122 | IPR001715 | Calponin homology domain |
Pfam | PF00307 | 2.4E-6 | 33 | 117 | IPR001715 | Calponin homology domain |
SMART | SM00355 | 41 | 321 | 341 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 87 | 383 | 403 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.1E-4 | 384 | 403 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 200 | 422 | 448 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 0.092 | 486 | 509 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF55298 | 3.77E-15 | 550 | 666 | IPR013813 | Endoribonuclease L-PSP/chorismate mutase-like |
Gene3D | G3DSA:3.30.1330.40 | 1.4E-14 | 550 | 668 | IPR013813 | Endoribonuclease L-PSP/chorismate mutase-like |
Pfam | PF01042 | 9.7E-11 | 556 | 661 | IPR006175 | YjgF/YER057c/UK114 family |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 668 aa Download sequence Send to blast |
TPRARIDAST RATPTSSSQA ARTPSSNTMG RLELVSWLNH ALRSDYASVQ ECGDGVAYCQ 60 LLDALHPGAV PLHRLDFNAR YLADNERNVR VLSQTMRSLG LPVEVDYEAL ASGKFIENNN 120 LLRWFHSYVA KNGMGALEAY DAYAARVRAQ RVKAHASTEM VRALTADDAD GDETDIESQD 180 DDDGPRSGEA RVRDADAKDN ETSDSDEDHD EDGARNRRAS LKSPETLFDD VSNAEGQRTS 240 QGAALQGRKR RTAQRPQRYA TSEDGAQEDD PDLALTGYYC QCGRTFATEV GLKIHRKRSS 300 CGAPLVDTRG NGAAQDASTK VSCEVCGQVC KSAHGLRTHQ NRWCKGRRAT NTNTVPQGAA 360 VASAEGTMFT TRKARRCVVR ETHNCSFVGK TFDELVEHMQ TVHNVILNTR APTELEMDIG 420 QRWCLHCPPD SFIAKNYRGL CTHYRKVHNI ILIEEVAETD GDEDVASGAA IHAKHAKTIE 480 LMSDQTDCTE CDYKSKTHKG LKTHMRMSHS MYVTSIAPPP RRRSSTKRRR DRSVTPAREH 540 VALAATIERI NPRRYDFSPI TTFGRLIWLA GISASDEVDP RFPGQMRQAL SNLVELLVEA 600 GTDVLHLVDV TIYLADIRDL YEAAEVWNEF FTDLGIPREQ RPVRNVLQSL VSKDKILKVE 660 LYAQAVLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2r8u_A | 3e-16 | 25 | 193 | 11 | 181 | Microtubule-associated protein RP/EB family member 1 |
2r8u_B | 3e-16 | 25 | 193 | 11 | 181 | Microtubule-associated protein RP/EB family member 1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5437 | 4 | 4 |