PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

gw1.4.779.1

Organism

Ostreococcus sp. RCC809

Taxonomic ID

385169

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

C2H2

Protein Properties

Length: 543aa MW: 60094.3 Da PI: 9.5906

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gw1.4.779.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	48	66	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +C Cg+sF+ + L++Hi gw1.4.779.1 48 RCRVCGRSFKAYDALEQHI 66 7*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.027	47	70	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.118	47	75	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	49	70	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.86E-7	301	339	No hit	No description
SMART	SM00451	5.3E-5	306	340	IPR003604	Zinc finger, U1-type
SMART	SM00355	20	309	333	IPR015880	Zinc finger, C2H2-like
Pfam	PF12874	4.7E-4	310	333	No hit	No description
PROSITE pattern	PS00028	0	311	333	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.1330.30	3.9E-14	404	504	IPR029064	50S ribosomal protein L30e-like
SuperFamily	SSF55315	3.53E-17	405	503	IPR029064	50S ribosomal protein L30e-like
Pfam	PF01248	3.2E-13	405	495	IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
STSRRVDASS SKGAVAHVAG MPKFPVITAE LLRSESRLSP MDKFGKVRCR VCGRSFKAYD 60 ALEQHIGASH FGLNNPYAKV LESARIAAGL APSGKDRINR VSLKLGDLVS SESKTSNSMV 120 NSLAAYFKPE RTKHKSVEKK EGNVHGGQMV RSTNAATSTG MVLRRGVERK DGKKKRHSTL 180 KKIILRERTM RREEETKKLV EEEVEVEIEV RVNWVYVRVS YEDDACRVRL MCMEEDEDDD 240 EEDDEMGEDE EVSARDPDAR EKLETLDERA PAGAWGARSL LAVLKTKDES AEDAKKKTQT 300 VVKAKQTPRT CAMCDVQCFG ERAWEEHVKG KAHAKKVALR DDPAAAKKLA AARAASGTTY 360 VGETGAESVR YAEQIITNEL NESTKTLLST LKRFQDRLYH TDKIKAKQRR RLLYGLREVA 420 KSVDAGTSKV IILAPNIEKI ESEGGLDDRI NEIIARAREN GVPIVVALTK RRVGKALGIP 480 SAVSVVSVLD YDGADEEFKR TVRLAAEGRA LYVKAQKRGK EDETTRVAAS TFDLGAKEFV 540 PAS

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

STSRRVDASS SKGAVAHVAG MPKFPVITAE LLRSESRLSP MDKFGKVRCR VCGRSFKAYD  60
ALEQHIGASH FGLNNPYAKV LESARIAAGL APSGKDRINR VSLKLGDLVS SESKTSNSMV  120
NSLAAYFKPE RTKHKSVEKK EGNVHGGQMV RSTNAATSTG MVLRRGVERK DGKKKRHSTL  180
KKIILRERTM RREEETKKLV EEEVEVEIEV RVNWVYVRVS YEDDACRVRL MCMEEDEDDD  240
EEDDEMGEDE EVSARDPDAR EKLETLDERA PAGAWGARSL LAVLKTKDES AEDAKKKTQT  300
VVKAKQTPRT CAMCDVQCFG ERAWEEHVKG KAHAKKVALR DDPAAAKKLA AARAASGTTY  360
VGETGAESVR YAEQIITNEL NESTKTLLST LKRFQDRLYH TDKIKAKQRR RLLYGLREVA  420
KSVDAGTSKV IILAPNIEKI ESEGGLDDRI NEIIARAREN GVPIVVALTK RRVGKALGIP  480
SAVSVVSVLD YDGADEEFKR TVRLAAEGRA LYVKAQKRGK EDETTRVAAS TFDLGAKEFV  540
PAS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003079049.1	0.0	Ribosomal protein L7Ae/L30e/S12e/Gadd45
TrEMBL	Q01A69	0.0	Q01A69_OSTTA; Ribosomal protein L7Ae/L30e/S12e/Gadd45
STRING	Q01A69	0.0	(Ostreococcus tauri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP765	5	5