PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | gw1.4.1151.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | NF-YB | ||||||||
Protein Properties | Length: 134aa MW: 14798.8 Da PI: 4.6099 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 45 | 2.6e-14 | 6 | 99 | 8 | 95 |
NF-YB 8 lPianvsrimkkvlPana......kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 lP a +++++ ++l a ++s +++++v ec efi v++ea++ + +e + ti+++ +l al lGf+ y ++ ++ + +e e+ gw1.4.1151.1 6 LPKATIAKMIAEALSASMgsgaslRMSPECRDMVVECCQEFIHAVSAEANEVSTKELKSTITAEHVLAALRRLGFDAYEAECEIARDEAKEEET 99 7888888888888875421222337999**************************************************9887776666666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.68E-28 | 2 | 132 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.3E-29 | 2 | 132 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-11 | 6 | 75 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
DDELGLPKAT IAKMIAEALS ASMGSGASLR MSPECRDMVV ECCQEFIHAV SAEANEVSTK 60 ELKSTITAEH VLAALRRLGF DAYEAECEIA RDEAKEEETE KRELKKKRKT TQMSEEDAIA 120 MQQELFARAA ARMA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 2e-26 | 1 | 129 | 11 | 132 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003079045.1 | 5e-54 | Histone-fold | ||||
TrEMBL | A0A454XXJ2 | 1e-52 | A0A454XXJ2_OSTTA; Histone-fold-containing protein | ||||
TrEMBL | Q01A73 | 1e-52 | Q01A73_OSTTA; Histone-fold | ||||
STRING | Q01A73 | 2e-53 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2422 | 15 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 6e-22 | nuclear factor Y, subunit B13 |