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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
gw1.24.267.1 |
Common Name | CHLNCDRAFT_15492 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
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Family |
HSF |
Protein Properties |
Length: 93aa MW: 11056.5 Da PI: 8.9936 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
gw1.24.267.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 106.7 | 1.8e-33 | 3 | 93 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98
Fl+k+ye+++++ + +isw ++g+sfvv+++ efa+++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+++ll +i+
gw1.24.267.1 3 FLTKTYELVDEAISDPIISWGADGQSFVVWKPAEFARDLLPLHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEYFLRGRRDLLGDIH 90
9****************************************************************999.........******************** PP
XXX CS
HSF_DNA-bind 99 rkk 101
r+k
gw1.24.267.1 91 RRK 93
*96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009408 | Biological Process | response to heat |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Blanc G, et al.
The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019] - Xiang J, et al.
Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice. Plant Cell Rep., 2013. 32(11): p. 1795-806 [PMID:23949687]
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