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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
gw1.19.139.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family |
HSF |
Protein Properties |
Length: 169aa MW: 19475.8 Da PI: 8.9691 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
gw1.19.139.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 86.4 | 3.9e-27 | 1 | 90 | 5 | 103 |
HHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
HSF_DNA-bind 5 klyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
k+++++ d++++++i w+++g++f v++++ ++++ Lpk FkhsnfaSF+RQLn YgF+k +++ eF + F++gk ell+++kr+
gw1.19.139.1 1 KTWNMVTDDSNDDVIAWNAKGKTFTVYKPDVLEEEYLPKAFKHSNFASFLRQLNNYGFRKCHSDA---------YEFGVQGFERGKPELLTTLKRHD 88
89***********************************************************9998.........78*******************98 PP
XX CS
HSF_DNA-bind 102 se 103
s+
gw1.19.139.1 89 ST 90
76 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009408 | Biological Process | response to heat |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 169 aa
Download sequence Send
to blast |
KTWNMVTDDS NDDVIAWNAK GKTFTVYKPD VLEEEYLPKA FKHSNFASFL RQLNNYGFRK 60 CHSDAYEFGV QGFERGKPEL LTTLKRHDST KGRKGAPRKK TAGGGGGDEL GAYGGIENEV 120 EQLKRDRLLL LKEVMRLRDT QSEQRDRVEE LSNRLEATEN FQTQMRHFV
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
2ldu_A | 4e-17 | 1 | 86 | 23 | 119 | Heat shock factor protein 1 |
5d5u_B | 5e-17 | 1 | 86 | 32 | 128 | Heat shock factor protein 1 |
5d5v_B | 5e-17 | 1 | 86 | 32 | 128 | Heat shock factor protein 1 |
5d5v_D | 5e-17 | 1 | 86 | 32 | 128 | Heat shock factor protein 1 |
5hdg_A | 4e-17 | 1 | 86 | 13 | 109 | Heat shock factor protein 1 |
5hdn_A | 4e-17 | 1 | 86 | 13 | 109 | Heat shock factor protein 1 |
5hdn_B | 4e-17 | 1 | 86 | 13 | 109 | Heat shock factor protein 1 |
5hdn_C | 4e-17 | 1 | 86 | 13 | 109 | Heat shock factor protein 1 |
5hdn_D | 4e-17 | 1 | 86 | 13 | 109 | Heat shock factor protein 1 |
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