PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh3_pg.C_scaffold_24000087
Common NameCHLNCDRAFT_54703
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family Nin-like
Protein Properties Length: 406aa    MW: 42609.8 Da    PI: 6.0501
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh3_pg.C_scaffold_24000087genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK58.81.1e-18257305551
                           RWP-RK   5 isledlsk..yFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
                                      +sle l++  yF++pi++AA eL v++T+LK+ CR ++I RWP+Rk +s
  fgenesh3_pg.C_scaffold_24000087 257 LSLEFLEEngYFDMPIQQAAAELHVGVTTLKKVCRVNNIGRWPFRKRSS 305
                                      55555543339***********************************776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.357240327IPR003035RWP-RK domain
PfamPF020422.7E-16265306IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MTSPSPVCEA TLLAPDFARL DDHRAPLCTP TLRALGGDHL AVGTHSLSSP HIASPALAGW  60
TPRLTGKDED AEEGGGGGPR LRSIERASLA AATAAPSLAL PIEPVPLPPL LQSNFLSVSL  120
PTNVSEFAGV ADFNQTQAGS NSDAPVGVCG MPQLLVKAEP TTSAGSESAG TCQLPAAGML  180
NSSGGKHPTY ATLTADGVAA ALAMSSDIMQ QRDQELEQQQ QFGTHNCSSN GNGSRPGTAS  240
ASAVAAAAAD ELSDNRLSLE FLEENGYFDM PIQQAAAELH VGVTTLKKVC RVNNIGRWPF  300
RKRSSLNRLI EKTREYFAGD SQQCAEALAQ LEAQRSVLQA QQGEDIPESV KRYRQSIFKL  360
DYKVKCAKRS GRWRQAVEHG SGGTVELLSA LGLPLQPPSL SPGHN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005844285.10.0hypothetical protein CHLNCDRAFT_54703
TrEMBLE1ZPP50.0E1ZPP5_CHLVA; Uncharacterized protein
STRINGXP_005844285.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP841650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.18e-14RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]