PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pm.chr_4_#_82
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family TALE
Protein Properties Length: 335aa    MW: 38042.9 Da    PI: 4.7421
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pm.chr_4_#_82genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.54.6e-082472941054
                             HHHHHHHHHHHHS...SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                Homeobox  10 eqleeLeelFekn...rypsaeereeLAkklgLterqVkvWFqNrRak 54 
                               +e+L++   +n   +yps e++ eL +k++L+ +qV +WF N R +
  fgenesh1_pm.chr_4_#_82 247 ASTEVLKKWWSENivwPYPSDEAKSELIAKTNLDATQVNNWFINFRKR 294
                             56677777777533339***************************9977 PP
2ELK23.11.7e-08215236122
                     ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                             +L++ L+rKY+  + +Lk+EF+
  fgenesh1_pm.chr_4_#_82 215 RLRQDLKRKYAKNILTLKSEFM 236
                             69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.6E-1359100IPR005540KNOX1
PfamPF037904.8E-86495IPR005540KNOX1
SMARTSM011880.0045215236IPR005539ELK domain
PROSITE profilePS5007111.823235298IPR001356Homeobox domain
SMARTSM003896.0E-9237302IPR001356Homeobox domain
SuperFamilySSF466891.11E-16237300IPR009057Homeodomain-like
CDDcd000864.49E-11238298No hitNo description
Gene3DG3DSA:1.10.10.601.3E-23240297IPR009057Homeodomain-like
PfamPF059202.7E-15255294IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0010094Biological Processspecification of carpel identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDGSSNEDAA CFETYFRDDG VEFVDDVVDA LPGFGEDVAA LVGADERGTP RSSESDESEE  60
MTLAIRAHPM YSRLVEAYYE CRKIGADSET ADALEREKSA MLYSTQATNE DSTSASSTFG  120
STDALDLDDY MRECTHELES YVKELHTAYE SAKECCEHFE ARARNVHEEV VRRERAAADA  180
CERRAPATAD EHADASDDFD KILSNARERR DHEERLRQDL KRKYAKNILT LKSEFMRKRK  240
KGKLPDASTE VLKKWWSENI VWPYPSDEAK SELIAKTNLD ATQVNNWFIN FRKRHWIKLF  300
GKGQQPRNED ESARALARAF GGSLEKAIEY ARSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220240KRKYAKNILTLKSEFMRKRKK
2236240RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003078964.11e-140Homeobox KN domain
TrEMBLA0A454XNE11e-139A0A454XNE1_OSTTA; Knotted class 1 homeodomain protein liguleless3
TrEMBLQ01AF41e-139Q01AF4_OSTTA; Homeobox KN domain
STRINGQ01AF41e-140(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP545189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.17e-28KNOTTED1-like homeobox gene 4