PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | fgenesh1_pm.chr_4_#_35 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | ERF | ||||||||
Protein Properties | Length: 416aa MW: 42909.6 Da PI: 10.4212 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 68.9 | 9.4e-22 | 33 | 83 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr+++ +g+W+AeIrdp + r +r +lg+f+taeeAa+a++aa++ ++g fgenesh1_pm.chr_4_#_35 33 SQYRGVRQRP-WGSWAAEIRDP---N-RgARLWLGTFDTAEEAARAYDAAARHIRG 83 78********.**********8...3.35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.03E-22 | 33 | 91 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.5E-15 | 33 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.77E-19 | 33 | 91 | No hit | No description |
PROSITE profile | PS51032 | 23.933 | 34 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-33 | 34 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-38 | 34 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MDARGSEGEG TDGERARTQG LKGDKASKKA TTSQYRGVRQ RPWGSWAAEI RDPNRGARLW 60 LGTFDTAEEA ARAYDAAARH IRGPNAKTNF QLAPGEEPPP FVLPEPPSGG RGGGGGGRGR 120 GVDTGFPSTT LGGAGPSSRG PNVLKKQKPA GKDAKGVPST IYGFGPGSTE KSSSTVPKRG 180 SINFGSGTDL SALVNANLAL ANQNLASAGS ARKDPENSFV KLFQNGSVGG TPSSTGGSPL 240 IMPESMELRG GMSPRTNAEI PVINGKRDRG PSSAFFGTSF GVAGSFGSMF PPEMALSSTP 300 DGGEGMNFYG EFSMSPKDRS THGSDHFPVG SLGTLRDLDD ALPAVGSLDL GSPVDLDSMM 360 NSLPKNSSGK VQTVTSILGK SNKKKDQDSP LGRASTRTTR ESRSKSALDA MAALK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 30 | 90 | 10 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 108 | 116 | GGRGGGGGG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000584 | 3e-87 | CP000584.1 Ostreococcus lucimarinus CCE9901 chromosome 4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022838868.1 | 1e-145 | DNA-binding domain | ||||
TrEMBL | A0A090M4Z9 | 1e-144 | A0A090M4Z9_OSTTA; DNA-binding domain | ||||
TrEMBL | A0A454XSF6 | 1e-144 | A0A454XSF6_OSTTA; Uncharacterized protein | ||||
STRING | A0A090M4Z9 | 1e-145 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP132 | 15 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11140.1 | 2e-18 | cytokinin response factor 1 |