PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.C_Chr_09.0001000270
Common NameOT_ostta09g03790
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family HB-other
Protein Properties Length: 149aa    MW: 17087.7 Da    PI: 11.5744
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.C_Chr_09.0001000270genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.57.9e-07991312254
                                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                      ++ p+ +e+++LAkk+gL+ + V+++F N R +
  fgenesh1_pg.C_Chr_09.0001000270  99 DPFPTLAEKKRLAKKVGLKVAAVSNFFINARVR 131
                                      5789***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500718.69772135IPR001356Homeobox domain
SMARTSM003895.9E-474139IPR001356Homeobox domain
SuperFamilySSF466891.45E-1176139IPR009057Homeodomain-like
CDDcd000863.72E-576135No hitNo description
Gene3DG3DSA:1.10.10.603.4E-1683136IPR009057Homeodomain-like
PfamPF059203.2E-1392131IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MGVDGSLSDS VDAREVRFER AFDDVEARFD GLKRRLEWPR SLGREGIALN ARAGVREMFA  60
RARLHRDKTR QVRRAKNRKL SGNDAQRALR MWILDHFDDP FPTLAEKKRL AKKVGLKVAA  120
VSNFFINARV RFWKPLVLQL AAEIERGD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003081371.21e-101Homeobox KN domain
TrEMBLA0A090MAP91e-99A0A090MAP9_OSTTA; Homeobox KN domain
STRINGA0A090MAP91e-100(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP321077
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27220.23e-15BEL1-like homeodomain 5
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]