PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | fgenesh1_pg.C_Chr_03.0001000152 | ||||||||
Common Name | OT_ostta03g02140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB_related | ||||||||
Protein Properties | Length: 151aa MW: 16686 Da PI: 10.0075 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.2 | 2.2e-09 | 63 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 r r+T+ E e l+++v+++G g+W+ I + Rt+ ++k++w+++ fgenesh1_pg.C_Chr_03.0001000152 63 RERFTKAEAEDLIKGVELYGLGQWAQIKLAYFrsTQRTGVDLKDKWRNL 111 78*************************755555*9************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.079 | 58 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-12 | 62 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-7 | 62 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-7 | 63 | 111 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.41E-13 | 65 | 123 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 2.00E-21 | 65 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MDRTSALLSD YGIGDGSEVV LLLNHEAGPV PVPPTAVNHG FPGEPVAKKA KKDKKEGQSD 60 KKRERFTKAE AEDLIKGVEL YGLGQWAQIK LAYFRSTQRT GVDLKDKWRN LVTASQRPPG 120 FKFRVEYLND PAFLGHVAKV NTDALSKHRE * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022838480.1 | 1e-108 | Ubiquitin supergroup | ||||
TrEMBL | A0A090M4P1 | 1e-106 | A0A090M4P1_OSTTA; Ubiquitin supergroup | ||||
TrEMBL | A0A1Y5I2S9 | 1e-107 | A0A1Y5I2S9_OSTTA; Uncharacterized protein | ||||
STRING | A0A090M4P1 | 1e-107 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP7363 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17460.2 | 7e-12 | TRF-like 3 |
Publications ? help Back to Top | |||
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