PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

fgenesh1_pg.8_#_101

Common Name

COCSUDRAFT_42053

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

C3H

Protein Properties

Length: 631aa MW: 66158.9 Da PI: 6.8474

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh1_pg.8_#_101	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.5	2.1e-07	132	152	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lC +f rtG+C+ ++C+FaHg fgenesh1_pg.8_#_101 132 LCAHFERTGQCPD-PKCRFAHG 152 9**********.*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.216	127	154	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.3E-8	131	157	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.7E-5	132	152	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50030	10.908	196	239	IPR015940	Ubiquitin-associated domain
SMART	SM00165	2.1E-6	201	238	IPR015940	Ubiquitin-associated domain
SuperFamily	SSF46934	2.04E-7	201	240	IPR009060	UBA-like
Gene3D	G3DSA:1.10.8.10	2.7E-6	202	238	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence Send to blast
MQAAINQQIL KDVYKTQRCS KVHCKGPLGT ATCWFFHSDQ DQLKPVGYKS QFCKTWKELV 60 IRTVASKFVE KSVEGDDSAS QFSIDGSVDF APGKKEVGIV PYSVQNGKMP VGVPQAAKQG 120 RRKAAKGVAL QLCAHFERTG QCPDPKCRFA HGAEELKLRQ LKARGGEEGG AAGGKTFNAA 180 LAPAPRKLSL AVLDAMRSHK LQAAVHMLMG MGFSFKAAED AARTTGANAE LAAQLLLDGG 240 GFHEGGVTET SVKGEADALC AMADSLDLAT SDVEAEVIRC HGDHLKAIQE LQQVKLNGGR 300 SVVRPPVPIH RRPPTIPEEE SNHEYLNKGW KSMAAPTWGP TGSSAPAAST YLHTPALLPH 360 NAPASIGTPY TSFKAPVKNI SAPAPTDEWQ QYRPEDFDPD PATPATGSGS DADLHAALLA 420 SMADAPPLGP ATGSKNAVHE QQINHAQSAC QHPQTRPRPL ASILDLQTQP QPGAYAILTA 480 APSMPQLVAP ATVAPHAAAP ASRNWFPPVP DTAAFQPAAT AVPAMSDALS NLHIAPLHTA 540 GAADGCNGDL ASGEVTPQPS INFDLSPPSV ISPCDGPSPS AQQLLPWLTN GTSKAKTNVP 600 APVPAPVKSA PVVEEAPTED FDSLMSLLMS *

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence Send to blast

MQAAINQQIL KDVYKTQRCS KVHCKGPLGT ATCWFFHSDQ DQLKPVGYKS QFCKTWKELV  60
IRTVASKFVE KSVEGDDSAS QFSIDGSVDF APGKKEVGIV PYSVQNGKMP VGVPQAAKQG  120
RRKAAKGVAL QLCAHFERTG QCPDPKCRFA HGAEELKLRQ LKARGGEEGG AAGGKTFNAA  180
LAPAPRKLSL AVLDAMRSHK LQAAVHMLMG MGFSFKAAED AARTTGANAE LAAQLLLDGG  240
GFHEGGVTET SVKGEADALC AMADSLDLAT SDVEAEVIRC HGDHLKAIQE LQQVKLNGGR  300
SVVRPPVPIH RRPPTIPEEE SNHEYLNKGW KSMAAPTWGP TGSSAPAAST YLHTPALLPH  360
NAPASIGTPY TSFKAPVKNI SAPAPTDEWQ QYRPEDFDPD PATPATGSGS DADLHAALLA  420
SMADAPPLGP ATGSKNAVHE QQINHAQSAC QHPQTRPRPL ASILDLQTQP QPGAYAILTA  480
APSMPQLVAP ATVAPHAAAP ASRNWFPPVP DTAAFQPAAT AVPAMSDALS NLHIAPLHTA  540
GAADGCNGDL ASGEVTPQPS INFDLSPPSV ISPCDGPSPS AQQLLPWLTN GTSKAKTNVP  600
APVPAPVKSA PVVEEAPTED FDSLMSLLMS *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005647641.1	0.0	hypothetical protein COCSUDRAFT_42053
TrEMBL	I0YXH8	0.0	I0YXH8_COCSC; Uncharacterized protein
STRING	XP_005647641.1	0.0	(Coccomyxa subellipsoidea)

Link Out ? help Back to Top
Entrez Gene	17041085

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]