PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Publication

Basic Information? help Back to Top

TF ID

fgenesh1_pg.6_#_173

Common Name

COCSUDRAFT_41370

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

bZIP

Protein Properties

Length: 400aa MW: 42666.9 Da PI: 7.8776

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh1_pg.6_#_173	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46	1.2e-14	51	107	6	62
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ++ rk+kNReAAr+sR+RK ++++L++ v eL++eN+ L k ++el+++ a++++e fgenesh1_pg.6_#_173 51 ATLRKAKNREAARKSRERKMRRVDNLTTSVNELTKENDLLSKCIQELSEQRASVEAE 107 689*************************************************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-10	44	110	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.4E-10	53	105	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.8E-11	53	104	No hit	No description
SuperFamily	SSF57959	7.5E-9	53	102	No hit	No description
CDD	cd14686	2.59E-12	54	102	No hit	No description
PROSITE profile	PS50217	10.438	54	111	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	54	68	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MPAIPIMQNM GHTSSQASQE SSGRRKRKAP SRSGELCGDD LSVLDVDCRE ATLRKAKNRE 60 AARKSRERKM RRVDNLTTSV NELTKENDLL SKCIQELSEQ RASVEAETRL TKEQIQAIRA 120 KAASQEDRQV IDRLLDNAVT MAHAQLPSQP QSQYPQLPLQ VPMQSHLAGA FCGSGSKDNV 180 EAAHWQGIPS TVQSSLIHPY AQRFMTPEEI VRGDRPSSAS DTLQPSAMYD GRLGPVPQQG 240 AEAGCMSGYA VNESGVTARG GSPASARAQP DVDTTPGAFP PHPKRSRSVR GGKAKRVSPP 300 SAESFGGPLM LPLSELRYQQ ELACHVEGPQ GLRREGSLDL LEAAGGIPSP ESLLAGSLSS 360 QGASFASGSS LSMGSMHDFF LDGASLLPPG VYAHSSSML*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MPAIPIMQNM GHTSSQASQE SSGRRKRKAP SRSGELCGDD LSVLDVDCRE ATLRKAKNRE  60
AARKSRERKM RRVDNLTTSV NELTKENDLL SKCIQELSEQ RASVEAETRL TKEQIQAIRA  120
KAASQEDRQV IDRLLDNAVT MAHAQLPSQP QSQYPQLPLQ VPMQSHLAGA FCGSGSKDNV  180
EAAHWQGIPS TVQSSLIHPY AQRFMTPEEI VRGDRPSSAS DTLQPSAMYD GRLGPVPQQG  240
AEAGCMSGYA VNESGVTARG GSPASARAQP DVDTTPGAFP PHPKRSRSVR GGKAKRVSPP  300
SAESFGGPLM LPLSELRYQQ ELACHVEGPQ GLRREGSLDL LEAAGGIPSP ESLLAGSLSS  360
QGASFASGSS LSMGSMHDFF LDGASLLPPG VYAHSSSML*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005648599.1	0.0	hypothetical protein COCSUDRAFT_41370
TrEMBL	I0Z086	0.0	I0Z086_COCSC; Uncharacterized protein
STRING	XP_005648599.1	0.0	(Coccomyxa subellipsoidea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75390.1	1e-07	basic leucine-zipper 44

Link Out ? help Back to Top
Entrez Gene	17042053

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]