PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Publication

Basic Information? help Back to Top

TF ID

fgenesh1_pg.3_#_171

Common Name

COCSUDRAFT_40110

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

bZIP

Protein Properties

Length: 430aa MW: 48576.9 Da PI: 5.6033

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh1_pg.3_#_171	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.3	3.7e-09	84	134	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 r + +kNR A+rr+R+R k + eL+ kv+eLe+ +L +e +l++ fgenesh1_pg.3_#_171 84 PRSKMQEKNRRAQRRFRERQKTKFTELTGKVEELEGRLGELLSEKARLEDR 134 6777889*************************************9999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-4	79	144	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.818	82	145	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.5E-9	84	142	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.6E-7	85	142	No hit	No description
Pfam	PF00170	6.1E-7	85	136	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	87	102	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MGSGYLGLDP VLPSVGIGAP LAYQPYTPFD NSATERQLAD LFPNHLDMLN VPGLPQIDPY 60 HAVFQEDPLF GPSVEEGQEG EEKPRSKMQE KNRRAQRRFR ERQKTKFTEL TGKVEELEGR 120 LGELLSEKAR LEDRTTILEH TLEMRRATSG ETDDSLARRF SSVELSDTGA SSSSPAGHVP 180 SPLPHGALMA PGLSDDLAEG SVRFFHDELR LSLPFNGEHT LTLEDLKKTT PRDIICIYEQ 240 YVEELRSCLQ VEAAHQPLTP AAVRVVKLAN EISTLLLRAW ALNPVAMRQM HQQLSAHAEE 300 RTPDARNEHR RIAACLRLTE EQREKLVAVT ARFQHQRSTL LTQRQGIYAR LQRPSDHVNV 360 TQEAIDEFLR AHDAMKMLKI NLCQEHWETL SYGSTATQLL TPWQMATLLV ESYPQWYDFL 420 ALAEVLDEK*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MGSGYLGLDP VLPSVGIGAP LAYQPYTPFD NSATERQLAD LFPNHLDMLN VPGLPQIDPY  60
HAVFQEDPLF GPSVEEGQEG EEKPRSKMQE KNRRAQRRFR ERQKTKFTEL TGKVEELEGR  120
LGELLSEKAR LEDRTTILEH TLEMRRATSG ETDDSLARRF SSVELSDTGA SSSSPAGHVP  180
SPLPHGALMA PGLSDDLAEG SVRFFHDELR LSLPFNGEHT LTLEDLKKTT PRDIICIYEQ  240
YVEELRSCLQ VEAAHQPLTP AAVRVVKLAN EISTLLLRAW ALNPVAMRQM HQQLSAHAEE  300
RTPDARNEHR RIAACLRLTE EQREKLVAVT ARFQHQRSTL LTQRQGIYAR LQRPSDHVNV  360
TQEAIDEFLR AHDAMKMLKI NLCQEHWETL SYGSTATQLL TPWQMATLLV ESYPQWYDFL  420
ALAEVLDEK*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005650403.1	0.0	hypothetical protein COCSUDRAFT_40110
TrEMBL	I0Z5E0	0.0	I0Z5E0_COCSC; Uncharacterized protein
STRING	XP_005650403.1	0.0	(Coccomyxa subellipsoidea)

Link Out ? help Back to Top
Entrez Gene	17043863

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]