PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.25_#_70
Common NameCOCSUDRAFT_45533
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family Whirly
Protein Properties Length: 251aa    MW: 27171.1 Da    PI: 10.1949
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.25_#_70genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly91.41e-28742191136
               Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelan.......ataerkydWekkqsfalsatevaelvd..laskesceffhdpa 81 
                          ++yk+kaa +   ++p +++ + g++ l+raG+l++e+a+        +++r y W+kkq+fals+ e+a lv+   + k   e+fhdp 
  fgenesh1_pg.25_#_70  74 AIYKGKAAASFRVRKPRWVEAQDGSISLDRAGSLIVEFAPvapgsgtNVGNRSYQWDKKQTFALSPVELAGLVEscTTGKSMKELFHDPN 163
                          59*************************************833333333699**********************97555667789****** PP

               Whirly  82 akgsneGkvrkalkvePlpdGsGlfvnlsvtnslvk.gnesfsvPvskaefavlrs 136
                          ++g+++Gk+ k+l+++ +  G   +++l+v+ s  k g  ++ +P++ ae   l+s
  fgenesh1_pg.25_#_70 164 KGGTDSGKIAKTLSLQRFDQGQDWYLQLAVKDSASKdGSATMGLPITGAELYTLKS 219
                          ******************************9997763677889*******999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.107.6E-4661239IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544477.85E-2869235IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.8E-3275219IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSMKVASQKQ LGIRQVHRIA MMQGRSLAAS GLCNKVAPLK IVHRKPHGTT RCYAAAAPAQ  60
AQQSQQRNLY ANYAIYKGKA AASFRVRKPR WVEAQDGSIS LDRAGSLIVE FAPVAPGSGT  120
NVGNRSYQWD KKQTFALSPV ELAGLVESCT TGKSMKELFH DPNKGGTDSG KIAKTLSLQR  180
FDQGQDWYLQ LAVKDSASKD GSATMGLPIT GAELYTLKSL SEFLIPRLLG WDEVLAEPEL  240
VPANSYGSRQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A2e-316923911171Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B2e-316923911171Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C2e-316923911171Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D2e-316923911171Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005642827.10.0ssDNA-binding transcriptional regulator
TrEMBLI0YIR40.0I0YIR4_COCSC; SsDNA-binding transcriptional regulator
STRINGXP_005642827.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP20261516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-32WHIRLY 2
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]