PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

fgenesh1_pg.11_#_47

Common Name

COCSUDRAFT_42839

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

CAMTA

Protein Properties

Length: 321aa MW: 34416.8 Da PI: 9.883

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh1_pg.11_#_47	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	151.8	1.6e-47	31	145	2	117
CG-1 2 lkekkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 +k ++ wl+n+e++++L+n++++++ e++++p+ gsl+L+nrk vr+frkDG+ w+kk dgktvrE+hekLKvg+ e+l+cyYah+e fgenesh1_pg.11_#_47 31 TKARTSWLRNQEVVDLLTNYRSYRFRVskEPPQKPPGGSLFLFNRKTVRFFRKDGHDWRKKSDGKTVRETHEKLKVGNKEILNCYYAHAE 120 67799*************9887765559******************************************************98 PP CG-1 90 enptfqrrcywlLeeelekivlvhylev 117 + +qrrcywlL+ + +++vlvhyl++ fgenesh1_pg.11_#_47 121 D--ALQRRCYWLLDGD-DNVVLVHYLSS 145 7..699******.******986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	55.949	26	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.3E-49	29	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.7E-46	33	144	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071275	Biological Process	cellular response to aluminum ion
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MGQLAVPAEQ LGSGAASSTE QLPKVLRDIL TKARTSWLRN QEVVDLLTNY RSYRFRVSKE 60 PPQKPPGGSL FLFNRKTVRF FRKDGHDWRK KSDGKTVRET HEKLKVGNKE ILNCYYAHAE 120 DALQRRCYWL LDGDDNVVLV HYLSSNPHAN CVLRSPSLNG NPSFSGAMPL NALEGPPSYP 180 QVGTSTAWDA APASGMSRTN SVPENFGSSS NGAAGQQPAA LPTMFTVTTG DVITRTASGE 240 GAVALELPQL PALRLEFKGT SPSSGPADAT LRPACALQSQ DIARSLAHSG STGRLSRDTS 300 STLAGGLQRR DPSLKLGLGL *

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00043	PBM	Transfer from AT5G64220	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005646337.1	0.0	CG-1-domain-containing protein
TrEMBL	I0YTS4	0.0	I0YTS4_COCSC; CG-1-domain-containing protein
STRING	XP_005646337.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5132	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	7e-45	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Entrez Gene	17039778

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]