PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold05661.1
Common NameAMTR_s05661p00002040, LOC18421264
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 498aa    MW: 53452.1 Da    PI: 7.2346
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold05661.1genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2218.6e-07245266223
                                             EETTTTEEESSHHHHHHHHHHT CS
                                 zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                              C++Cgk F+r  nL+ H+r H
  evm_27.model.AmTr_v1.0_scaffold05661.1 245 FCSICGKGFKRDANLRMHMRGH 266
                                             6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.95E-5243266No hitNo description
SMARTSM003550.0023244266IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.552244271IPR007087Zinc finger, C2H2
PROSITE patternPS000280246266IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-5246268IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035574294327IPR015880Zinc finger, C2H2-like
SMARTSM0035537332354IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MVGSGSSYDG NFEQGLLQLP GTSGILSPSD QGVCNPRVLM NNLLFLEQKI HDLQGVVKSM  60
IDEDCSDDLS IRQRMVSSDI ASIMVQFVST AGKLGFGSGQ NSNCLQTGTG IGASGFPMNS  120
LHQFGNGFLT IGDSEMGVGT NLLDSVVHRE VKDVGAAELG GCLTTDNTFA PSRNGFPDDN  180
KSRENYVCNG ARPSVVVPQG PQPDSDFNGG AKEEEDDGDV EDLIPGSYEL LELEKEEILA  240
PHTHFCSICG KGFKRDANLR MHMRGHGDKY KTPEALARPT SKDPKGEGLH LKRYSCPFEG  300
CKRNQKHKKF QPLKTILCVK NHYKRSHCDK SYICSRCHSK KFSVMADLKT HEKHCGQDKW  360
QCSCGTTFSR KDKLFGHVAL FQGHTPALPL PEAKGSGVSD TQGVKSEGMK KPSFNGVTGN  420
VIPSMLGCGT SNPSFISSSR AGYEGEACGN NGRVHTHSGI TGVGMKQGFL EEFLGSNIGF  480
PQSAATLLGG SHSFPSL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826148.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ943I61e-113STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLU5CKF00.0U5CKF0_AMBTC; Uncharacterized protein
STRINGERM933850.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.31e-100C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]