PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold02859.1
Common NameAMTR_s02859p00001300, LOC18436530
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 310aa    MW: 35285.6 Da    PI: 8.4202
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold02859.1genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.81.5e-2178757128
                                     NAM  57 ewyfFskrdkkyatgkrknratk........sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkge 117
                                             + +fF++ +k+y+tg+rk+r+++        + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+e
  evm_27.model.AmTr_v1.0_scaffold02859.1   7 SRHFFHRPSKAYTTGTRKRRKIQtecdlqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKHRKPE 76 
                                             569*****************73334555544778************.999***********5547999999 PP

                                     NAM 118 ktdWvmheyrl 128
                                             kt+Wvmh+y+l
  evm_27.model.AmTr_v1.0_scaffold02859.1  77 KTNWVMHQYHL 87 
                                             *********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.0531106IPR003441NAC domain
SuperFamilySSF1019411.7E-234106IPR003441NAC domain
PfamPF023651.3E-7987IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
VTRDGLSRHF FHRPSKAYTT GTRKRRKIQT ECDLQGGETR WHKTGKTRPV MVNGKQKGCK  60
KILVLYTNFG KHRKPEKTNW VMHQYHLGQH EEEREGELVV SKIFYQTQPR QCSWSDKSVE  120
RESVGVERER AKASCQASSS ELAIEHVTKE GGHRDDMVSG FVAMDVQQMK ANDHFSFAPF  180
RKSFDEVGMC ESSNVTESST SLCNPGSCEE RESSSGLSTT MAQAHMGHQQ QVAYHISRPS  240
NPISAIISPP PLHHQTTLVM DDSFHVSRLL FQGDKFQHQQ QQHKIAERPG SHKISLDELF  300
MDCTPSDMKE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006846748.20.0NAC domain-containing protein 19, partial
SwissprotQ9M0F83e-87NAC75_ARATH; NAC domain-containing protein 75
TrEMBLU5CVE10.0U5CVE1_AMBTC; Uncharacterized protein (Fragment)
STRINGERN083290.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.18e-75NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]