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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm_27.model.AmTr_v1.0_scaffold01267.1 |
| Common Name | AMTR_s01267p00006490, LOC18425515 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
MYB |
| Protein Properties |
Length: 234aa MW: 27131.3 Da PI: 6.1727 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold01267.1 | genome | TAGP | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 46.1 | 1.1e-14 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+W +eEd +l+ vk+ G ++W+ Ia+ g++R++k+c++rw +yl
evm_27.model.AmTr_v1.0_scaffold01267.1 10 RGPWMEEEDIKLAMSVKLIGERRWDHIAQVSGLKRSGKSCRLRWMNYL 57
89********************************************97 PP
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| 2 | Myb_DNA-binding | 51.1 | 3.1e-16 | 64 | 108 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
gr+T++E+ l +++++q+G++ W++Iar+++ gRt++++k++w+++l
evm_27.model.AmTr_v1.0_scaffold01267.1 64 GRMTAQEECLVLQLHAQWGNK-WSRIARRLP-GRTDNEIKNYWRTHL 108
89*******************.*********.************996 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 234 aa
Download sequence Send
to blast |
MGGEIEERRR GPWMEEEDIK LAMSVKLIGE RRWDHIAQVS GLKRSGKSCR LRWMNYLRPD 60
LKQGRMTAQE ECLVLQLHAQ WGNKWSRIAR RLPGRTDNEI KNYWRTHLRK EAQERCQATS 120
PSSFQDPTSL LLSHSKDKEP PNAHMKDFAP DNSLSGSSSP SSESVTTFDD YFLYADRSLP 180
CLQMDEKWIA DPHDEAEFWN SSHGPSDYYT DSLWNLEEED LKLEKCGANG RYF*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. {ECO:0000305}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP5 | 17 | 1784 |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Amborella Genome Project
The Amborella genome and the evolution of flowering plants.
Science, 2013. 342(6165): p. 1241089
[PMID:24357323] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Nishida S,Kakei Y,Shimada Y,Fujiwara T
Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
Plant J., 2017. 91(4): p. 741-753
[PMID:28586097] - Hickman R, et al.
Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
Plant Cell, 2017. 29(9): p. 2086-2105
[PMID:28827376]
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