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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
evm_27.model.AmTr_v1.0_scaffold00405.1 |
| Common Name | AMTR_s00405p00009920 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
| Family |
WOX |
| Protein Properties |
Length: 231aa MW: 25707.5 Da PI: 7.204 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00405.1 | genome | TAGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.5 | 2.6e-19 | 33 | 93 | 3 | 57 |
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
+R+ +t+eq+++L el+++ r p+ae++++++++l +++ ++V++WFqN++a+e++
evm_27.model.AmTr_v1.0_scaffold00405.1 33 SRWIPTAEQIRILRELYYSngVRSPTAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 93
7****************97568*************************************97 PP
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| 2 | Wus_type_Homeobox | 111.3 | 5e-36 | 31 | 95 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
+++RW Pt+eQi+iL+ely+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
evm_27.model.AmTr_v1.0_scaffold00405.1 31 SNSRWIPTAEQIRILRELYYsNGVRSPTAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 95
689***************9989*****************************************96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 231 aa
Download sequence Send
to blast |
MDHSDNCPGN NNNSGSGSGS GTKSGYMCRQ SNSRWIPTAE QIRILRELYY SNGVRSPTAE 60
QIQRISARLR QYGKIEGKNV FYWFQNHKAR ERQKKRLTVD LAVQRAAATS GGLPPGVLNV 120
SHIAGSTCGS VLMESSLMDC CSTSALENHN GRKERANGDM IVERERSAPG KETLQLFPMH 180
HSPQNDDTIA DDYFFNDEEE KPVCMASLEL TLNSFDRVYH PDSDFRSHSS *
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FM882145 | 4e-66 | FM882145.1 Amborella trichopoda partial wus gene for putative wuschel homeobox protein WUS. |
