PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm_27.model.AmTr_v1.0_scaffold00349.2 | ||||||||
Common Name | AMTR_s00349p00012820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 130aa MW: 15014.6 Da PI: 5.3109 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 39.4 | 2e-12 | 60 | 125 | 1 | 62 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgC 62 kfYn+YA++ GFs+r + +k k+n+ kr++vC k gk+++++++ ++ + ++++ ++gC evm_27.model.AmTr_v1.0_scaffold00349.2 60 KFYNAYAERKGFSIRLVRPRKDKDNN-LRKRDYVCLKDGKNSSSTNNkgrmqSNVKGTQNERGKVGC 125 6*****************99996666.****************999966554444444666667777 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.7E-10 | 60 | 125 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 130 aa Download sequence Send to blast |
MDQDEFYKNK FMDVSYDNVI ATGDGEDIEV PLFCDQQNNS EHQKDLFIGM DFEYEDVVNK 60 FYNAYAERKG FSIRLVRPRK DKDNNLRKRD YVCLKDGKNS SSTNNKGRMQ SNVKGTQNER 120 GKVGCNEIC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | W1NQK1 | 1e-89 | W1NQK1_AMBTC; Uncharacterized protein | ||||
STRING | ERM98072 | 2e-90 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G28530.1 | 2e-07 | FAR1-related sequence 10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm_27.model.AmTr_v1.0_scaffold00349.2 |
Publications ? help Back to Top | |||
---|---|---|---|
|