PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm_27.model.AmTr_v1.0_scaffold00269.3 | ||||||||
Common Name | AMTR_s00269p00010030, LOC18434922 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 224aa MW: 24097.5 Da PI: 7.049 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.4 | 1.9e-06 | 71 | 94 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C+ f+ t C++G+ C+F H evm_27.model.AmTr_v1.0_scaffold00269.3 71 KPKPCMKFFSTSGCQFGEACHFLH 94 6789******************** PP | |||||||
2 | zf-CCCH | 25.7 | 2e-08 | 134 | 160 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC++f + C++G++C+FaHg+ evm_27.model.AmTr_v1.0_scaffold00269.3 134 YKTKLCNRFGTSEGCRFGEKCHFAHGE 160 9************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.709 | 28 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.75 | 28 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.27E-5 | 32 | 58 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-7 | 34 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.1 | 34 | 54 | No hit | No description |
PROSITE profile | PS50103 | 11.282 | 69 | 97 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.02E-5 | 70 | 95 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-7 | 71 | 94 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-5 | 71 | 94 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.89 | 71 | 96 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-15 | 133 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.892 | 133 | 161 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0029 | 133 | 160 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-9 | 134 | 165 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-5 | 134 | 160 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 224 aa Download sequence Send to blast |
MEPMIKRPRS EDVGSGTNPR VSETHEWSNG DMECRRYNTP EGCPFGSNCR FRHGASDNRD 60 ISQQNMSLGA KPKPCMKFFS TSGCQFGEAC HFLHYAPGGV SSIALNLLSS GTAASSIRKP 120 SGPVGDPSFT VNGYKTKLCN RFGTSEGCRF GEKCHFAHGE KELRTPSNSS KGNVSYFDSY 180 GNNNNSSDLN SQGYSEPNPP GVPADEASAN YPADLVEANV PVY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006845044.1 | 1e-166 | zinc finger CCCH domain-containing protein 52 | ||||
Swissprot | Q7F8R0 | 1e-27 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | W1PGB1 | 1e-164 | W1PGB1_AMBTC; Uncharacterized protein | ||||
STRING | ERN06719 | 1e-165 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17663 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-14 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm_27.model.AmTr_v1.0_scaffold00269.3 |
Entrez Gene | 18434922 |
Publications ? help Back to Top | |||
---|---|---|---|
|