PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00269.3
Common NameAMTR_s00269p00010030, LOC18434922
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C3H
Protein Properties Length: 224aa    MW: 24097.5 Da    PI: 7.049
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00269.3genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-067194225
                                            -S---SGGGGTS--TTTTT-SS-S CS
                                 zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                                            k ++C+ f+ t  C++G+ C+F H
  evm_27.model.AmTr_v1.0_scaffold00269.3 71 KPKPCMKFFSTSGCQFGEACHFLH 94
                                            6789******************** PP
2zf-CCCH25.72e-08134160127
                                             --S---SGGGGTS--TTTTT-SS-SSS CS
                                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                             ykt+lC++f  +  C++G++C+FaHg+
  evm_27.model.AmTr_v1.0_scaffold00269.3 134 YKTKLCNRFGTSEGCRFGEKCHFAHGE 160
                                             9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.7092856IPR000571Zinc finger, CCCH-type
SMARTSM003560.752855IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-53258IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-73459IPR000571Zinc finger, CCCH-type
PfamPF146080.13454No hitNo description
PROSITE profilePS5010311.2826997IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-57095IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-77194IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-57194IPR000571Zinc finger, CCCH-type
SMARTSM003560.897196IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-15133166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892133161IPR000571Zinc finger, CCCH-type
SMARTSM003560.0029133160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-9134165IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5134160IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEPMIKRPRS EDVGSGTNPR VSETHEWSNG DMECRRYNTP EGCPFGSNCR FRHGASDNRD  60
ISQQNMSLGA KPKPCMKFFS TSGCQFGEAC HFLHYAPGGV SSIALNLLSS GTAASSIRKP  120
SGPVGDPSFT VNGYKTKLCN RFGTSEGCRF GEKCHFAHGE KELRTPSNSS KGNVSYFDSY  180
GNNNNSSDLN SQGYSEPNPP GVPADEASAN YPADLVEANV PVY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006845044.11e-166zinc finger CCCH domain-containing protein 52
SwissprotQ7F8R01e-27C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLW1PGB11e-164W1PGB1_AMBTC; Uncharacterized protein
STRINGERN067191e-165(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1766322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-14C3H family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]