PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

MYB

Protein Properties

Length: 295aa MW: 33703.4 Da PI: 9.3715

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00186.1	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.5	6.2e-18	15	60	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ evm_27.model.AmTr_v1.0_scaffold00186.1 15 RGHWRPGEDEKLRQLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 60 899***************************.*********996 PP
2	Myb_DNA-binding	60.6	3.3e-19	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ evm_27.model.AmTr_v1.0_scaffold00186.1 67 RRPFTPEEEERLLSAHRHHGNK-WALIARLFP-GRTDNAVKNHWHV 110 679*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.168	10	61	IPR017930	Myb domain
SuperFamily	SSF46689	4.49E-30	13	108	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-14	14	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.8E-17	15	60	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-27	16	68	IPR009057	Homeodomain-like
CDD	cd00167	1.34E-13	18	59	No hit	No description
PROSITE profile	PS51294	27.993	62	116	IPR017930	Myb domain
SMART	SM00717	8.3E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-16	67	109	IPR001005	SANT/Myb domain
CDD	cd00167	1.78E-12	69	109	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.2E-22	69	115	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MENSGSVDDQ KSSPRGHWRP GEDEKLRQLV EQYGPQNWNS IAEKLQGRSG KSCRLRWFNQ 60 LDPRINRRPF TPEEEERLLS AHRHHGNKWA LIARLFPGRT DNAVKNHWHV IMARKHRERS 120 RIVNKRRCNH LITHSDNSSN NTTTSQPYYR ISTVFDPCNM TLSGLGIRDQ FSNVRYALPS 180 STRATVGLLS PSFSTIGRPF PCTWGGFAAP SDQREFYSYD SEFYGNSSRR EPCSYNFSGL 240 SCRSGHEIQN PQGQLTYMFF GNESKEDDQE EVGSEAMKKK NTGFIDFLGV GLSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	8e-31	15	115	4	104	MYB PROTO-ONCOGENE PROTEIN
1h88_C	3e-30	15	115	58	158	MYB PROTO-ONCOGENE PROTEIN
1h89_C	3e-30	15	115	58	158	MYB PROTO-ONCOGENE PROTEIN
1mse_C	7e-31	15	115	4	104	C-Myb DNA-Binding Domain
1msf_C	7e-31	15	115	4	104	C-Myb DNA-Binding Domain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006843047.1	0.0	transcription factor MYB46 isoform X1
TrEMBL	W1P4D5	0.0	W1P4D5_AMBTC; Uncharacterized protein
STRING	ERN04722	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	3e-65	myb domain protein 105

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00186.1
Entrez Gene	18432891

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]