PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00185.22 | ||||||||
Common Name | AMTR_s00185p00053640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 198aa MW: 21705.2 Da PI: 10.5813 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 74.4 | 4.5e-23 | 1 | 192 | 1 | 180 |
GAGA_bind 1 mdddgsre.rnkg.yye..........paaslkenlglqlmssiaerdakirernlalsekkaavaerdm 58 md+ ++ r+k+ +y+ p++s+k++ +++lm+++aerda+i+ern+als+k+aa+aerd evm_27.model.AmTr_v1.0_scaffold00185.22 1 MDEGQRENgRHKPdQYKamlghsqwnaPQQSMKDHPAFKLMALMAERDAAIQERNAALSDKRAALAERDL 70 777777779****99*9******9998779**************************************** PP GAGA_bind 59 aflqrdkalaernkalverdnkllalllvensla.salpvg.vqvlsgtksidslqqlsepqledsavel 126 a qrd+a aern al erd +++al+++++ + + +p+g ++++ + ++ + s p +d++++ evm_27.model.AmTr_v1.0_scaffold00185.22 71 AISQRDAAYAERNTALQERDAAIAALEYARDYGMgTGQPQGpPGAMPRAPRAHVDPNSSYPP-RDNSQP- 138 ***************************98876555666665245666766666555533333.333333. PP GAGA_bind 127 reeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkk 180 ++++ +ea+pi+++++ + k+k+ kr r++ + + +++kk ++ +++++k+ evm_27.model.AmTr_v1.0_scaffold00185.22 139 NHHNVTEAYPISSSEPALNVKPKRAKRPRKEGANKAPHQAKKAGGPRQRRSKKQ 192 355678899999988887766666655555544444444444445555554443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 1.4E-5 | 1 | 196 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.5E-13 | 12 | 182 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MDEGQRENGR HKPDQYKAML GHSQWNAPQQ SMKDHPAFKL MALMAERDAA IQERNAALSD 60 KRAALAERDL AISQRDAAYA ERNTALQERD AAIAALEYAR DYGMGTGQPQ GPPGAMPRAP 120 RAHVDPNSSY PPRDNSQPNH HNVTEAYPIS SSEPALNVKP KRAKRPRKEG ANKAPHQAKK 180 AGGPRQRRSK KQGGSMT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006852993.3 | 1e-136 | LOW QUALITY PROTEIN: barley B recombinant-like protein D | ||||
TrEMBL | U5CWY4 | 1e-140 | U5CWY4_AMBTC; Uncharacterized protein | ||||
STRING | ERN14460 | 1e-141 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2841 | 13 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 3e-25 | basic pentacysteine 6 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00185.22 |
Publications ? help Back to Top | |||
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