PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00185.21 | ||||||||
Common Name | AMTR_s00185p00053620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 95aa MW: 10402.2 Da PI: 9.973 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 231 | 9.5e-71 | 1 | 94 | 208 | 301 |
GAGA_bind 208 lPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGy 277 +P+PvCsCtG+l+qCYkWGnGGWqSaCCtt+iS+yPLPv++++r+aR++grKmS++af+klL++LaaeG+ evm_27.model.AmTr_v1.0_scaffold00185.21 1 MPIPVCSCTGVLQQCYKWGNGGWQSACCTTQISMYPLPVMPNKRHARVGGRKMSGSAFTKLLSRLAAEGH 70 9********************************************************************* PP GAGA_bind 278 dlsnpvDLkdhWAkHGtnkfvtir 301 dls p+DLkdhWAkHGtn+++ti+ evm_27.model.AmTr_v1.0_scaffold00185.21 71 DLSVPLDLKDHWAKHGTNRYITIK 94 ***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 8.2E-68 | 1 | 94 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 2.8E-22 | 1 | 94 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MPIPVCSCTG VLQQCYKWGN GGWQSACCTT QISMYPLPVM PNKRHARVGG RKMSGSAFTK 60 LLSRLAAEGH DLSVPLDLKD HWAKHGTNRY ITIK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00540 | DAP | Transfer from AT5G42520 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006852993.3 | 3e-66 | LOW QUALITY PROTEIN: barley B recombinant-like protein D | ||||
Swissprot | Q5VSA8 | 5e-59 | BBRD_ORYSJ; Barley B recombinant-like protein D | ||||
TrEMBL | U5CWE0 | 7e-65 | U5CWE0_AMBTC; Uncharacterized protein | ||||
STRING | ERN14459 | 1e-65 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2841 | 13 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.3 | 3e-61 | basic pentacysteine 6 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00185.21 |
Publications ? help Back to Top | |||
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