PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00185.19 | ||||||||
Common Name | AMTR_s00185p00047700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | C3H | ||||||||
Protein Properties | Length: 622aa MW: 68639.3 Da PI: 7.8685 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.4 | 8e-06 | 198 | 210 | 14 | 26 |
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 C+yG++C+F+H+ evm_27.model.AmTr_v1.0_scaffold00185.19 198 ACSYGGNCRFSHD 210 8***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.465 | 186 | 212 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.20.20.70 | 3.8E-53 | 427 | 612 | IPR013785 | Aldolase-type TIM barrel |
CDD | cd02801 | 7.09E-67 | 431 | 612 | No hit | No description |
SuperFamily | SSF51395 | 2.01E-41 | 431 | 612 | No hit | No description |
Pfam | PF01207 | 3.6E-37 | 434 | 611 | IPR001269 | tRNA-dihydrouridine synthase |
PROSITE pattern | PS01136 | 0 | 515 | 533 | IPR018517 | tRNA-dihydrouridine synthase, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002943 | Biological Process | tRNA dihydrouridine synthesis | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0017150 | Molecular Function | tRNA dihydrouridine synthase activity | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 622 aa Download sequence Send to blast |
MDYDFPVVPW ITLNFFSRAH CLKLTCIQRT KPKTLGKAPA VTHGENGNPR KISIGLNYRE 60 YPVMDGAVPL SGGDGGAIEA LKESVPFSGG DGGAIDALEE AISSNVEAEA QVSSKPNELL 120 SPEELVAKSV APVKKEYILP APLSRPCSNV KASEKLCNSG LLLTEKKSKR QLKRERREKQ 180 KSVLHVCPEV ARVGNIKACS YGGNCRFSHD LDAFLAQKPE DLPGTCPFMC VEEPCPYGMA 240 CRFSGTHKHG ISAKKKADRN KLSEMNGLSK ELQKLLWKKN KENFTRADAQ LKNLGFMIKG 300 NAKVRKTDEN GAEDQEDMAN RSNDQEKQDN CAIMRPSCND ISCFSSPQME DDAIKTEDTQ 360 PLKKSKIPID DTPCSGQMHN DHMLPETNEE QTITKSENEN VLRSEDSRVL EVDADLKVNA 420 REKKLIDFKG KLYLAPLTTA GYLPFRRVCK NLGADITCGE MAMCTNLLQG QASEWALLRR 480 HSSEDLFGVQ LCGAYPDTGA RTIELVDREC TVDFIDINMG CPIDIVVNKG AGSSLLTKPM 540 KMKNIIEAAS GTVDKTITVK VRTGYLEGRN RIDSLIADIG KWGANALTIH GRSRQQRYSK 600 LADWAYIYQC ARKAQDGLQE H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ei9_A | 1e-16 | 428 | 613 | 27 | 211 | tRNA-dihydrouridine synthase B |
6ei9_B | 1e-16 | 428 | 613 | 27 | 211 | tRNA-dihydrouridine synthase B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020528213.1 | 0.0 | tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like | ||||
Swissprot | Q7XT07 | 1e-176 | DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like | ||||
TrEMBL | U5CZ94 | 0.0 | U5CZ94_AMBTC; tRNA-dihydrouridine(47) synthase [NAD(P)(+)] | ||||
STRING | ERN14457 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5751 | 12 | 13 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00185.19 |
Publications ? help Back to Top | |||
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