PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00184.20 | ||||||||
Common Name | AMTR_s00184p00044240, LOC18440173 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | LBD | ||||||||
Protein Properties | Length: 225aa MW: 24213.6 Da PI: 5.2478 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 112.5 | 2.8e-35 | 5 | 105 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearar 70 +C aCk+lrrkC+++Cv+ap fpa++p kfa +h +FGasn++k+l++lp+ r da+ sl+yeAe +r evm_27.model.AmTr_v1.0_scaffold00184.20 5 PCGACKHLRRKCVRECVFAPFFPADNPDKFASIHTVFGASNLTKILSELPRVCRGDAIVSLIYEAESLIR 74 7********************************************************************* PP DUF260 71 dPvyGavgvilklqqqleqlkaelallkeel 101 dP +G + +i++lq leql+++++++++el evm_27.model.AmTr_v1.0_scaffold00184.20 75 DPTKGPLHHIQSLQMGLEQLQEDIKVAQQEL 105 **************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.64 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-34 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MVTGPCGACK HLRRKCVREC VFAPFFPADN PDKFASIHTV FGASNLTKIL SELPRVCRGD 60 AIVSLIYEAE SLIRDPTKGP LHHIQSLQMG LEQLQEDIKV AQQELATLIS GESSSSNDPP 120 NPAPSLADGR TSDPPMMPPS SVAPPLMPTA PVTDRFLMQP VRQQVASDAV QYEFSSPSAF 180 FEASWNRLMS LTLEDAQRMG VHYIGGQDVT PATGTGMAGT SSLW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-33 | 4 | 112 | 10 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-33 | 4 | 112 | 10 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006850389.1 | 1e-166 | protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | W1PX40 | 1e-165 | W1PX40_AMBTC; Uncharacterized protein | ||||
STRING | ERN11970 | 1e-166 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 4e-36 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00184.20 |
Entrez Gene | 18440173 |
Publications ? help Back to Top | |||
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