PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00184.19 | ||||||||
Common Name | AMTR_s00184p00043710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | LBD | ||||||||
Protein Properties | Length: 151aa MW: 15831.3 Da PI: 7.3732 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92 | 7.2e-29 | 4 | 100 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearar 70 +CaaCk++ rkC++dC+lap+fp +++f vh +FG +nv +ll+++p+ r da+++l++eAea ++ evm_27.model.AmTr_v1.0_scaffold00184.19 4 RCAACKYHHRKCPPDCILAPHFPIGTTERFLTVHSVFGSANVARLLAEVPPPLRGDAITTLLFEAEALLN 73 6********************************************************************* PP DUF260 71 dPvyGavgvilklqqqleqlkaelall 97 + +G ++ i +lq +l++l++++ ++ evm_27.model.AmTr_v1.0_scaffold00184.19 74 NGTKGPIAYIESLQMELRSLQTQIIAA 100 *********************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.93 | 3 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-29 | 4 | 98 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MACRCAACKY HHRKCPPDCI LAPHFPIGTT ERFLTVHSVF GSANVARLLA EVPPPLRGDA 60 ITTLLFEAEA LLNNGTKGPI AYIESLQMEL RSLQTQIIAA NLELNMLRSR ATPPSVAPAC 120 STPPPSPGDS SSVIEGSGGM ELNGKPVGSP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-25 | 5 | 104 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-25 | 5 | 104 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | W1PVW1 | 1e-105 | W1PVW1_AMBTC; Uncharacterized protein | ||||
STRING | ERN11969 | 1e-105 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 1e-25 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00184.19 |
Publications ? help Back to Top | |||
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