PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00183.27
Common NameAMTR_s00183p00052730, LOC18445056
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C3H
Protein Properties Length: 362aa    MW: 40261.6 Da    PI: 7.9039
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00183.27genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-08123145426
                                              ---SGGGGTS--TTTTT-SS-SS CS
                                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                              + C++f+++  C++G+ C FaHg
  evm_27.model.AmTr_v1.0_scaffold00183.27 123 VVCPDFRKGSGCRRGEACEFAHG 145
                                              68******99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.75E-5118149IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4119146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.253120147IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6123145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5124147IPR000571Zinc finger, CCCH-type
SMARTSM0035623155178IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MPEFCADKSQ MHIQNALFSE KAPVLSSSPT GRHRLLRLNI DEIPNSFDFE TGRIHPNSPF  60
FIASYDEEDD FMDPYASDAF RMFDFKVKKC ARGRSHDWTE CPFAHPGEKA RRRDPRRFHY  120
SGVVCPDFRK GSGCRRGEAC EFAHGVFECW LHPARYRTQP CKDGRSCTRR ICFFAHTPAQ  180
LRVLPPGMSN VCCCHFSGLS LTRKGPLSCN SGVSFSDGVK LACKYVASSP TSTLSLLSPP  240
RSPSLSPPLS PAEAGSSRVS PLSLYQKSAP MHIPLNFQRN KMIAELCKSL EVMEFSEQNG  300
HGWFNSPQSF ISSSSPSLSS TPPPVSFTRG SFEPNVIPEE SEKAVGNISF PDLDWVDELV  360
M*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006855265.10.0zinc finger CCCH domain-containing protein 2
TrEMBLU5D5M30.0U5D5M3_AMBTC; Uncharacterized protein
STRINGERN167320.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.27e-66C3H family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]