PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00176.20
Common NameAMTR_s00176p00045260, LOC18439566
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ARR-B
Protein Properties Length: 660aa    MW: 71520.5 Da    PI: 6.6692
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00176.20genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.19.7e-29221274155
                                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                              kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  evm_27.model.AmTr_v1.0_scaffold00176.20 221 KPRVVWSVELHQQFVNAVNQL-GIDKAVPKRILELMNVQGLTRENVASHLQKFRL 274
                                              79*******************.********************************8 PP
2Response_reg75.22.5e-25361441109
                                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHH CS
                             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeiree 68 
                                              vl+vdD+ + +++l+q+l+k  y +v+++  +++al++l+ ++  +D+++ D+ mp+mdG++ll++   e
  evm_27.model.AmTr_v1.0_scaffold00176.20  36 VLVVDDDTTCLRILEQMLRKCMY-KVTTCCRATDALDTLRGSKgcFDVVISDVYMPDMDGFKLLEHVGLE 104
                                              89*********************.***************999999**********************664 PP

                                              TTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                             Response_reg  69 epklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                                +lp+i+++a +  + + + +k Ga d+l Kp+ +eel +
  evm_27.model.AmTr_v1.0_scaffold00176.20 105 M-DLPVIMMSADARFSAVMKGIKHGACDYLIKPVRIEELKN 144
                                              4.8***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.8E-4233169No hitNo description
SuperFamilySSF521723.7E-3533158IPR011006CheY-like superfamily
SMARTSM004488.0E-3034146IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.5335150IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.8E-2236144IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.13E-2637149No hitNo description
PROSITE profilePS5129411.184218277IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-29219279IPR009057Homeodomain-like
SuperFamilySSF466891.34E-19219278IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-25221274IPR006447Myb domain, plants
PfamPF002496.3E-7223272IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MANVQKLPHS SISTASSYGS CRGEGVPDQF PAGLRVLVVD DDTTCLRILE QMLRKCMYKV  60
TTCCRATDAL DTLRGSKGCF DVVISDVYMP DMDGFKLLEH VGLEMDLPVI MMSADARFSA  120
VMKGIKHGAC DYLIKPVRIE ELKNIWQHVV RKKWNETKEH DQSGSIEDNE RHKRGSDDAE  180
YASSVNEGTD GNWKVQKKRK DSKEEEDDGE QENEDPSAAK KPRVVWSVEL HQQFVNAVNQ  240
LGIDKAVPKR ILELMNVQGL TRENVASHLQ KFRLYLKRLS GHQAGVSSSF CGSVDPNSKL  300
GPLSQLDIRA LTASGQIPSQ TLAALQAELL GRPSNNVAMP VYGQTLVKCQ PNLPKQFPQP  360
NLPVDDVQSS LSIWQHHLSS GMPLGGLNPQ NNGLLMQQQQ QLTIESNRPC NVQPSCHVAP  420
SNGGFTMRNN PTSSNASSVE YNSLLSSQGD VGQISQASGS DLATTVQSNG GFKSLDYRNM  480
GQVSLESTSD LVSTQNNGFK GMELRNVGSL GGYPLSSSVS AGSTKTENGQ SFSQVRTGPR  540
MSMGPTGQFV GPPTIRRLPM VDGGTHRNSL GFVGKGVSIP SRFMPDSGSP TGVGEECTLP  600
KQEVDPDFFD SLKVGPVGVQ HYASGDLMSV LSKQQQASTG NLDCEFGIDG YQLGNIHVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-23217280164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006849799.10.0two-component response regulator ORR21 isoform X1
SwissprotA2XE311e-145ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-145ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLW1PVR00.0W1PVR0_AMBTC; Uncharacterized protein
STRINGERN113800.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-118response regulator 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]