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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm_27.model.AmTr_v1.0_scaffold00169.34 |
Common Name | AMTR_s00169p00055880 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family |
Dof |
Protein Properties |
Length: 318aa MW: 34370.4 Da PI: 8.5586 |
Description |
Dof family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm_27.model.AmTr_v1.0_scaffold00169.34 | genome | TAGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-Dof | 125.2 | 2.1e-39 | 31 | 87 | 5 | 61 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
lkcprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk k++
evm_27.model.AmTr_v1.0_scaffold00169.34 31 PLKCPRCDSMNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKTKTT 87
689**************************************************9986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MIQGLLGGAT DRCGKPNPSS QEKGSAADHP PLKCPRCDSM NTKFCYYNNY NLTQPRHFCK 60 TCRRYWTKGG ALRNVPIGGG CRKTKTTTTT NTNTNTTTTP TTKFTKPRPL SSEPSDVVKQ 120 NLDHPHFDHE PIWLPQISHP LLDLHVPTTS SPSGGLGLDW AFLRPNPNPS PSPNGFVVKE 180 ESPMIIGSGP SAFALNTHTL DPIINQTNLN LSPYWRTNSA NNGTTTSLNV TSTSCSTTTP 240 STSSNGQHVF MGGSESQIVK QEMYNKLRAS MNYYTDQQQV ALGLGGSPME MGGGDIGYWN 300 SALSWSDLPA TTNGAFP*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM084363 | 2e-32 | AM084363.1 Hordeum vulgare subsp. vulgare partial dof15 gene for dof zinc finger protein 15. |
Orthologous Group
? help Back to Top |
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP38 | 17 | 445 |