PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00169.24 | ||||||||
Common Name | AMTR_s00169p00042500, LOC18438300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | LBD | ||||||||
Protein Properties | Length: 300aa MW: 33350.6 Da PI: 8.239 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 110.9 | 9.3e-35 | 11 | 101 | 1 | 91 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearar 70 +CaaCk+lrrkC+++C++apyfp ++p++fa vhk+FGasnv+kll+++++ +re+a++ l++eA+ r++ evm_27.model.AmTr_v1.0_scaffold00169.24 11 PCAACKFLRRKCTTECAFAPYFPPDHPERFADVHKVFGASNVSKLLNNISPPNREAAVTGLFFEARKRIQ 80 7********************************************************************* PP DUF260 71 dPvyGavgvilklqqqleqlk 91 dPv+G++++i++l +l++l evm_27.model.AmTr_v1.0_scaffold00169.24 81 DPVHGCTAHINELYGELNELY 101 *************99998775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.754 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-34 | 11 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MMPSNNSNNS PCAACKFLRR KCTTECAFAP YFPPDHPERF ADVHKVFGAS NVSKLLNNIS 60 PPNREAAVTG LFFEARKRIQ DPVHGCTAHI NELYGELNEL YDLIKNAMNE LATYSPPYPH 120 PQLHHYLEMP ALPPSSKQQQ LPTAFAPPQQ LSAVQQYQQL SANAVQPREQ QPSEHRTLPL 180 QRKISSCHHH HYQEMMHAAS PSASQQLQQL SASASAAGAA QQHMQFSAAR PVKTEGQLHC 240 TKQPMMMPLP PPQQQRQQVV TGYEAELRSR EKAFVEAFKA GRDGCRSYLH GDGGEPHSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-36 | 3 | 115 | 3 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-36 | 3 | 115 | 3 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006848549.1 | 0.0 | LOB domain-containing protein 36 | ||||
TrEMBL | W1PSA1 | 0.0 | W1PSA1_AMBTC; Uncharacterized protein | ||||
STRING | ERN10130 | 0.0 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 5e-40 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00169.24 |
Entrez Gene | 18438300 |
Publications ? help Back to Top | |||
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