PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00167.5 | ||||||||
Common Name | AMTR_s00167p00019840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | bHLH | ||||||||
Protein Properties | Length: 160aa MW: 17527.9 Da PI: 9.6726 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.5 | 0.00028 | 54 | 91 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+ YI+ L evm_27.model.AmTr_v1.0_scaffold00167.5 54 RKEKLGERITALQQLVSPY-----GKTDTASVLHEAMGYIRFL 91 66788899999*****999.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.585 | 42 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.68E-5 | 52 | 96 | No hit | No description |
SuperFamily | SSF47459 | 9.16E-12 | 52 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.3E-8 | 52 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MFWGRLKTRR SDVGEASIEH KKHSGSVEHG NGEAGVQFKK PKVDSSASVP LKVRKEKLGE 60 RITALQQLVS PYGKTDTASV LHEAMGYIRF LHDQVQVLST PYLQRIPPSS LREAGEEESK 120 YDLRSRGLCL VPVSCTLHVA SSNGADFWAP AMASNSSKY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011625214.1 | 1e-106 | transcription factor bHLH113 | ||||
Swissprot | Q9LT67 | 4e-43 | BH113_ARATH; Transcription factor bHLH113 | ||||
TrEMBL | W1PT28 | 1e-114 | W1PT28_AMBTC; Uncharacterized protein | ||||
STRING | ERN10871 | 1e-115 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1342 | 13 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 2e-45 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00167.5 |
Publications ? help Back to Top | |||
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