PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00164.27
Common NameAMTR_s00164p00062120, LOC18439105
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 385aa    MW: 42375 Da    PI: 4.3656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00164.27genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.5e-103133531055
                                              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                      HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                              r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  evm_27.model.AmTr_v1.0_scaffold00164.27 313 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 353
                                              9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.224303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-14303368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-12308362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.45E-12312357No hitNo description
PfamPF000101.2E-7313353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEPATIVDAF WSSNVGAQFS TCCGEASSMG LGDEAEFMSL LLANYPFMGS QAGQEETELN  60
VRVPTSWPTT NMVENEVPIE NGAYFSSESL NPSSYYWYQG GLMNTPSECD GIPNISSLKN  120
GVFPMIQSSI PKEFSGCYSV DDQNTSPSLQ TISDRPLEGA LCEREMMGTE NLKELRERKP  180
IKIVTPKRKF EDSSFNDGAP VTDAAFITGE DSQSEETTQI EPQKRAQVSG DVYKSGKTVH  240
SKKTQKLRTD DEEENNTMNV QSSCSYSSED DSNASQDQNT TTSSGKGSTA LNINGKTRAG  300
RGSATDPQSL YARKRRERIN ERLRILQNLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS  360
SDDLWMYAPI AYNGMDLGLD LKIS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006849343.20.0transcription factor bHLH139
TrEMBLW1PSU70.0W1PSU7_AMBTC; Uncharacterized protein
STRINGERN109240.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-47bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]