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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00159.24 | ||||||||
Common Name | AMTR_s00159p00062070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | AP2 | ||||||||
Protein Properties | Length: 188aa MW: 21403.2 Da PI: 9.0498 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.6 | 1.5e-13 | 81 | 137 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ g ++ +e Aa+a++ a++k++g evm_27.model.AmTr_v1.0_scaffold00159.24 81 SIYRGVTRHRWTGRYEAHLWDkSTWNEnQNKKGKQGAYDEEEAAARAYDLAALKYWG 137 57*******************66666666744455********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.4E-15 | 81 | 146 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.9E-10 | 81 | 137 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-19 | 82 | 151 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.465 | 82 | 145 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-12 | 82 | 146 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-5 | 83 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-5 | 127 | 147 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MASTSSVEQQ KKKGVEEEEG GEPPPSSMAT TVKMAKDFSL DHHLRYHLFG GLNKHGKRER 60 GSTAKERISK MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNENQN KKGKQGAYDE 120 EEAAARAYDL AALKYWGPGT LINFPVTDYT RDVEEMQMFS REDYLASLRR KVFVLFLFLE 180 ELLCCSS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020526667.1 | 1e-101 | AP2-like ethylene-responsive transcription factor At2g41710 | ||||
Swissprot | Q8GWK2 | 5e-64 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | W1PXH0 | 1e-138 | W1PXH0_AMBTC; Uncharacterized protein | ||||
STRING | ERN12125 | 1e-139 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP9107 | 10 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 6e-60 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00159.24 |
Publications ? help Back to Top | |||
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